* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘lingamr’ ... ** this is package ‘lingamr’ version ‘0.1.2’ ** package ‘lingamr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘lingamr’ finding HTML links ... done as_bootstrap_result html autoplot.LiMResult html autoplot.LingamResult html autoplot.MultiGroupLingamResult html autoplot.ParceLingamResult html autoplot.RCDResult html bootstrap_with_imputation html build_adjacency_matrix_rcd html build_lag_matrix html build_lavaan_model html build_true_adjacency html calc_tau html calc_taus html calculate_total_effect html check_glmnet_available html check_lavaan_available html check_mice_available html check_var_stationarity html compute_varlingam_residuals html contract_violation html create_bootstrap_result html create_var_bootstrap_result html default_cd_fit html default_imputer html diff_mutual_info html entropy_approx html estimate_adjacency_matrix html estimate_adjacency_matrix_high_dim_np html estimate_adjacency_matrix_parce html estimate_all_total_effects html estimate_total_effect html estimate_total_effect_parce html estimate_total_effect_rcd html estimate_var_total_effect html evaluate_model_fit html exists_ancestor_in_U html extract_adjacency_matrix html extract_ancestors html extract_parents html extract_partial_orders html extract_vars_sharing_confounders html f_correlation html fcorr_svd_transform html find_all_paths html find_exo_vec html fit_adaptive_lasso html fit_lasso html fit_ols html fit_ols_ic_pruned html fit_penalized_regression html fit_ridge_reg html fit_var_ols html generate_lim_sample html generate_lingam_hard_sample html generate_lingam_large_sample html generate_lingam_paradox_data html generate_lingam_sample_10 html generate_lingam_sample_6 html generate_multi_group_sample html generate_noise_matrix html generate_parce_sample html generate_rcd_sample html generate_varlingam_sample html get_adjacency_matrix_summary html get_causal_direction_counts html get_causal_order_stability html get_directed_acyclic_graph_counts html get_error_independence_p_values html get_error_independence_p_values_parce html get_error_independence_p_values_rcd html get_group_result html get_paths html get_probabilities html get_prune_stats html get_total_causal_effects html get_var_names html get_var_paths html get_var_probabilities html glance.LiMResult html glance.LingamResult html glance.MultiGroupLingamResult html glance.ParceLingamResult html glance.RCDResult html high_dim_causal_order html hsic_gram_matrix html hsic_kernel_width html hsic_test_gamma html ic_glmnet html incomplete_cholesky_fcorr html incomplete_cholesky_gauss html is_independent_of_resid html kernel_mi_core html kernel_mi_core_lowrank html kernel_mi_prepare html kernel_mi_prepare_lowrank html kurtosis_pop html lambda_scale_factor html lavaan_fit_measures_to_df html lim_adj html lim_bic_loss html lim_flatten_rowmajor html lim_global_optimize html lim_h html lim_likelihood_i html lim_local_search html lim_log1pexp html lim_logcosh html lim_loss_mixed html lim_obj_grad html lim_topological_order html lingam_direct html lingam_direct_bootstrap html lingam_high_dim html lingam_lim html lingam_multi_group html lingam_multi_group_bootstrap html lingam_parce html lingam_parce_bootstrap html lingam_rcd html lingam_rcd_bootstrap html lingam_residuals html lingam_var html lingam_var_bootstrap html lingamr-package html make_noise_fn html make_prior_knowledge html mlhsicr_regression html multi_group_total_effect_matrix html mutual_information_kernel html parce_eval_independence html parce_order_rank html parce_residual html parce_search_candidate html parce_search_causal_order html pinv html plot_adjacency html plot_bootstrap_probabilities html plot_residual_qq html plot_varlingam_residual_qq html predict_adaptive_lasso_cv html print.BootstrapResult html print.ImputationBootstrapResult html print.LiMResult html print.LingamResult html print.MultiGroupBootstrapResult html print.MultiGroupLingamResult html print.ParceLingamResult html print.RCDResult html print.VARBootstrapResult html print.VARLiNGAMResult html print.causal_order_stability html print.lingam_normality_test html print.lingam_summary html print.var_stationarity html prune_var_lingam html rcd_is_correlated html rcd_is_independent html rcd_is_non_gaussian_all html rcd_ols_resid_coef html rcd_resolve_index html reexports html residual_vec html resolve_var_index html roll_rows html sd_pop html search_candidate html search_causal_order_kernel html search_causal_order_pwling html search_causal_order_pwling_multi html select_var_lag html setup_cluster_worker html shapiro_subsample html skewness_pop html summary_lingam html test_residual_normality html test_varlingam_residual_normality html test_varlingam_residual_normality_all html tidy.BootstrapResult html tidy.ImputationBootstrapResult html tidy.LiMResult html tidy.LingamResult html tidy.MultiGroupBootstrapResult html tidy.MultiGroupLingamResult html tidy.ParceLingamResult html tidy.RCDResult html validate_cd_fit_output html validate_imputer_output html validate_lingam_result html validate_no_degenerate_columns html validate_parce_result html validate_prior_knowledge html validate_rcd_result html validate_sample_args html var_total_effect_graph html zero_lingam_result html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lingamr)