* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘lingamr’ ...
** this is package ‘lingamr’ version ‘0.1.2’
** package ‘lingamr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘lingamr’
finding HTML links ... done
as_bootstrap_result html
autoplot.LiMResult html
autoplot.LingamResult html
autoplot.MultiGroupLingamResult html
autoplot.ParceLingamResult html
autoplot.RCDResult html
bootstrap_with_imputation html
build_adjacency_matrix_rcd html
build_lag_matrix html
build_lavaan_model html
build_true_adjacency html
calc_tau html
calc_taus html
calculate_total_effect html
check_glmnet_available html
check_lavaan_available html
check_mice_available html
check_var_stationarity html
compute_varlingam_residuals html
contract_violation html
create_bootstrap_result html
create_var_bootstrap_result html
default_cd_fit html
default_imputer html
diff_mutual_info html
entropy_approx html
estimate_adjacency_matrix html
estimate_adjacency_matrix_high_dim_np html
estimate_adjacency_matrix_parce html
estimate_all_total_effects html
estimate_total_effect html
estimate_total_effect_parce html
estimate_total_effect_rcd html
estimate_var_total_effect html
evaluate_model_fit html
exists_ancestor_in_U html
extract_adjacency_matrix html
extract_ancestors html
extract_parents html
extract_partial_orders html
extract_vars_sharing_confounders html
f_correlation html
fcorr_svd_transform html
find_all_paths html
find_exo_vec html
fit_adaptive_lasso html
fit_lasso html
fit_ols html
fit_ols_ic_pruned html
fit_penalized_regression html
fit_ridge_reg html
fit_var_ols html
generate_lim_sample html
generate_lingam_hard_sample html
generate_lingam_large_sample html
generate_lingam_paradox_data html
generate_lingam_sample_10 html
generate_lingam_sample_6 html
generate_multi_group_sample html
generate_noise_matrix html
generate_parce_sample html
generate_rcd_sample html
generate_varlingam_sample html
get_adjacency_matrix_summary html
get_causal_direction_counts html
get_causal_order_stability html
get_directed_acyclic_graph_counts html
get_error_independence_p_values html
get_error_independence_p_values_parce html
get_error_independence_p_values_rcd html
get_group_result html
get_paths html
get_probabilities html
get_prune_stats html
get_total_causal_effects html
get_var_names html
get_var_paths html
get_var_probabilities html
glance.LiMResult html
glance.LingamResult html
glance.MultiGroupLingamResult html
glance.ParceLingamResult html
glance.RCDResult html
high_dim_causal_order html
hsic_gram_matrix html
hsic_kernel_width html
hsic_test_gamma html
ic_glmnet html
incomplete_cholesky_fcorr html
incomplete_cholesky_gauss html
is_independent_of_resid html
kernel_mi_core html
kernel_mi_core_lowrank html
kernel_mi_prepare html
kernel_mi_prepare_lowrank html
kurtosis_pop html
lambda_scale_factor html
lavaan_fit_measures_to_df html
lim_adj html
lim_bic_loss html
lim_flatten_rowmajor html
lim_global_optimize html
lim_h html
lim_likelihood_i html
lim_local_search html
lim_log1pexp html
lim_logcosh html
lim_loss_mixed html
lim_obj_grad html
lim_topological_order html
lingam_direct html
lingam_direct_bootstrap html
lingam_high_dim html
lingam_lim html
lingam_multi_group html
lingam_multi_group_bootstrap html
lingam_parce html
lingam_parce_bootstrap html
lingam_rcd html
lingam_rcd_bootstrap html
lingam_residuals html
lingam_var html
lingam_var_bootstrap html
lingamr-package html
make_noise_fn html
make_prior_knowledge html
mlhsicr_regression html
multi_group_total_effect_matrix html
mutual_information_kernel html
parce_eval_independence html
parce_order_rank html
parce_residual html
parce_search_candidate html
parce_search_causal_order html
pinv html
plot_adjacency html
plot_bootstrap_probabilities html
plot_residual_qq html
plot_varlingam_residual_qq html
predict_adaptive_lasso_cv html
print.BootstrapResult html
print.ImputationBootstrapResult html
print.LiMResult html
print.LingamResult html
print.MultiGroupBootstrapResult html
print.MultiGroupLingamResult html
print.ParceLingamResult html
print.RCDResult html
print.VARBootstrapResult html
print.VARLiNGAMResult html
print.causal_order_stability html
print.lingam_normality_test html
print.lingam_summary html
print.var_stationarity html
prune_var_lingam html
rcd_is_correlated html
rcd_is_independent html
rcd_is_non_gaussian_all html
rcd_ols_resid_coef html
rcd_resolve_index html
reexports html
residual_vec html
resolve_var_index html
roll_rows html
sd_pop html
search_candidate html
search_causal_order_kernel html
search_causal_order_pwling html
search_causal_order_pwling_multi html
select_var_lag html
setup_cluster_worker html
shapiro_subsample html
skewness_pop html
summary_lingam html
test_residual_normality html
test_varlingam_residual_normality html
test_varlingam_residual_normality_all html
tidy.BootstrapResult html
tidy.ImputationBootstrapResult html
tidy.LiMResult html
tidy.LingamResult html
tidy.MultiGroupBootstrapResult html
tidy.MultiGroupLingamResult html
tidy.ParceLingamResult html
tidy.RCDResult html
validate_cd_fit_output html
validate_imputer_output html
validate_lingam_result html
validate_no_degenerate_columns html
validate_parce_result html
validate_prior_knowledge html
validate_rcd_result html
validate_sample_args html
var_total_effect_graph html
zero_lingam_result html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lingamr)