* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘lessSEM’ ...
** this is package ‘lessSEM’ version ‘1.5.6’
** package ‘lessSEM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyKT5T2/R.INSTALL28ac55609e107e/lessSEM/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
In file included from ../inst/include/lesstimate/include/lesstimate.h:5,
from ../inst/include/lessSEM.h:4,
from RcppExports.cpp:4:
../inst/include/lesstimate/include/lesstimate/ista_class.h: In function ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&)’:
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from ../inst/include/lesstimate/include/lesstimate/common_headers.h:21,
from ../inst/include/lesstimate/include/lesstimate.h:4:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_class.h:10,
from ../inst/include/lesstimate/include/lesstimate.h:7:
../inst/include/lesstimate/include/lesstimate/bfgs.h: In function ‘arma::mat lessSEM::BFGS(const arma::rowvec&, const arma::rowvec&, const arma::mat&, const arma::rowvec&, const arma::rowvec&, bool, double, bool)’:
../inst/include/lesstimate/include/lesstimate/bfgs.h:71:25: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
71 | if (!arma::is_finite(Hessian_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In function ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:9,
from ../inst/include/lesstimate/include/lesstimate.h:8:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h: In member function ‘double lessSEM::penaltyMcpGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersMcpGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h:282:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
282 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:10:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h: In member function ‘double lessSEM::penaltyLSPGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersLspGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h:216:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
216 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate.h:9:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h: In function ‘arma::rowvec lessSEM::bfgsLineSearch(model&, smoothPenalty<T>&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const T&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:188:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
188 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:226:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
226 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersMixedPenalty; U = tuningParametersEnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:308:34: required from here
308 | fitResults fitResults_ = ista(
| ~~~~^
309 | userModel,
| ~~~~~~~~~~
310 | startingValues,
| ~~~~~~~~~~~~~~~
311 | proximalOperatorMixedPenalty_,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
312 | penalty_,
| ~~~~~~~~~
313 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
314 | tp,
| ~~~
315 | smoothTp,
| ~~~~~~~~~
316 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:131:36: required from here
131 | fitResults fitResults_ = glmnet(
| ~~~~~~^
132 | userModel,
| ~~~~~~~~~~
133 | startingValues,
| ~~~~~~~~~~~~~~~
134 | pen,
| ~~~~
135 | smoothPen,
| ~~~~~~~~~~
136 | tp,
| ~~~
137 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c SEM.cpp -o SEM.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c WLS.cpp -o WLS.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c callFitFunction.cpp -o callFitFunction.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c cappedL1.cpp -o cappedL1.o
In file included from ../inst/include/lesstimate/include/lesstimate.h:5,
from ../inst/include/lessSEM.h:4,
from SEMFitFramework.h:4,
from cappedL1.cpp:4:
../inst/include/lesstimate/include/lesstimate/ista_class.h: In function ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&)’:
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from cappedL1.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_class.h:10,
from ../inst/include/lesstimate/include/lesstimate.h:7:
../inst/include/lesstimate/include/lesstimate/bfgs.h: In function ‘arma::mat lessSEM::BFGS(const arma::rowvec&, const arma::rowvec&, const arma::mat&, const arma::rowvec&, const arma::rowvec&, bool, double, bool)’:
../inst/include/lesstimate/include/lesstimate/bfgs.h:71:25: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
71 | if (!arma::is_finite(Hessian_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In function ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:9,
from ../inst/include/lesstimate/include/lesstimate.h:8:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h: In member function ‘double lessSEM::penaltyMcpGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersMcpGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h:282:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
282 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:10:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h: In member function ‘double lessSEM::penaltyLSPGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersLspGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h:216:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
216 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate.h:9:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h: In function ‘arma::rowvec lessSEM::bfgsLineSearch(model&, smoothPenalty<T>&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const T&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:188:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
188 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:226:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
226 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersMixedPenalty; U = tuningParametersEnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:308:34: required from here
308 | fitResults fitResults_ = ista(
| ~~~~^
309 | userModel,
| ~~~~~~~~~~
310 | startingValues,
| ~~~~~~~~~~~~~~~
311 | proximalOperatorMixedPenalty_,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
312 | penalty_,
| ~~~~~~~~~
313 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
314 | tp,
| ~~~
315 | smoothTp,
| ~~~~~~~~~
316 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:131:36: required from here
131 | fitResults fitResults_ = glmnet(
| ~~~~~~^
132 | userModel,
| ~~~~~~~~~~
133 | startingValues,
| ~~~~~~~~~~~~~~~
134 | pen,
| ~~~~
135 | smoothPen,
| ~~~~~~~~~~
136 | tp,
| ~~~
137 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersCappedL1; U = tuningParametersEnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
cappedL1.cpp:89:52: required from ‘Rcpp::List istaCappedL1<sem>::optimize(Rcpp::NumericVector, sem&, double, double, double) [with sem = SEMCpp; Rcpp::List = Rcpp::Vector<19>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
89 | lessSEM::fitResults fitResults_ = lessSEM::ista(
| ~~~~~~~~~~~~~^
90 | SEMFF,
| ~~~~~~
91 | startingValues_,
| ~~~~~~~~~~~~~~~~
92 | proximalOperatorCappedL1_,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
93 | penalty_,
| ~~~~~~~~~
94 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
95 | tp,
| ~~~
96 | smoothTp,
| ~~~~~~~~~
97 | controlIsta
| ~~~~~~~~~~~
98 | );
| ~
cappedL1.cpp:133:44: required from here
133 | .method( "optimize", &istaCappedL1SEM::optimize, "Optimizes the model. Expects SEM, labeled vector with starting values, theta, lambda, and alpha")
| ^~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c dataset.cpp -o dataset.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c derivativeStructure.cpp -o derivativeStructure.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c elasticNet.cpp -o elasticNet.o
In file included from ../inst/include/lesstimate/include/lesstimate.h:5,
from ../inst/include/lessSEM.h:4,
from SEMFitFramework.h:4,
from elasticNet.cpp:4:
../inst/include/lesstimate/include/lesstimate/ista_class.h: In function ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&)’:
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from elasticNet.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_class.h:10,
from ../inst/include/lesstimate/include/lesstimate.h:7:
../inst/include/lesstimate/include/lesstimate/bfgs.h: In function ‘arma::mat lessSEM::BFGS(const arma::rowvec&, const arma::rowvec&, const arma::mat&, const arma::rowvec&, const arma::rowvec&, bool, double, bool)’:
../inst/include/lesstimate/include/lesstimate/bfgs.h:71:25: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
71 | if (!arma::is_finite(Hessian_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In function ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:9,
from ../inst/include/lesstimate/include/lesstimate.h:8:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h: In member function ‘double lessSEM::penaltyMcpGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersMcpGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h:282:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
282 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:10:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h: In member function ‘double lessSEM::penaltyLSPGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersLspGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h:216:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
216 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate.h:9:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h: In function ‘arma::rowvec lessSEM::bfgsLineSearch(model&, smoothPenalty<T>&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const T&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:188:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
188 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:226:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
226 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersMixedPenalty; U = tuningParametersEnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:308:34: required from here
308 | fitResults fitResults_ = ista(
| ~~~~^
309 | userModel,
| ~~~~~~~~~~
310 | startingValues,
| ~~~~~~~~~~~~~~~
311 | proximalOperatorMixedPenalty_,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
312 | penalty_,
| ~~~~~~~~~
313 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
314 | tp,
| ~~~
315 | smoothTp,
| ~~~~~~~~~
316 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:131:36: required from here
131 | fitResults fitResults_ = glmnet(
| ~~~~~~^
132 | userModel,
| ~~~~~~~~~~
133 | startingValues,
| ~~~~~~~~~~~~~~~
134 | pen,
| ~~~~
135 | smoothPen,
| ~~~~~~~~~~
136 | tp,
| ~~~
137 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersEnet; U = tuningParametersEnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
elasticNet.cpp:80:52: required from ‘Rcpp::List istaEnet<sem>::optimize(Rcpp::NumericVector, sem&, double, double) [with sem = SEMCpp; Rcpp::List = Rcpp::Vector<19>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
80 | lessSEM::fitResults fitResults_ = lessSEM::ista(
| ~~~~~~~~~~~~~^
81 | SEMFF,
| ~~~~~~
82 | startingValues_,
| ~~~~~~~~~~~~~~~~
83 | proximalOperatorLasso_,
| ~~~~~~~~~~~~~~~~~~~~~~~
84 | penalty_,
| ~~~~~~~~~
85 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
86 | tp,
| ~~~
87 | smoothTp,
| ~~~~~~~~~
88 | controlIsta
| ~~~~~~~~~~~
89 | );
| ~
elasticNet.cpp:462:40: required from here
462 | .method( "optimize", &istaEnetSEM::optimize, "Optimizes the model. Expects SEM, labeled vector with starting values, lambda, and alpha")
| ^~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h: In instantiation of ‘arma::rowvec lessSEM::bfgsLineSearch(model&, smoothPenalty<T>&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const T&, double, double, double, int, int) [with T = tuningParametersSmoothElasticNet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:341:36: required from ‘lessSEM::fitResults lessSEM::bfgsOptim(model&, numericVector, smoothPenalty<T>&, const T&, const controlBFGS&) [with T = tuningParametersSmoothElasticNet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
341 | parameters_k = bfgsLineSearch(model_,
| ~~~~~~~~~~~~~~^~~~~~~~
342 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
343 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
344 | parameterLabels,
| ~~~~~~~~~~~~~~~~
345 | direction,
| ~~~~~~~~~~
346 | fit_kMinus1,
| ~~~~~~~~~~~~
347 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
348 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
349 |
|
350 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
351 |
|
352 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
353 | control_.sigma,
| ~~~~~~~~~~~~~~~
354 | control_.gamma,
| ~~~~~~~~~~~~~~~
355 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
356 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
elasticNet.cpp:329:57: required from ‘Rcpp::List bfgsEnet<sem>::optimize(Rcpp::NumericVector, sem&, double, double) [with sem = SEMCpp; Rcpp::List = Rcpp::Vector<19>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
329 | lessSEM::fitResults fitResults_ = lessSEM::bfgsOptim(
| ~~~~~~~~~~~~~~~~~~^
330 | SEMFF,
| ~~~~~~
331 | startingValues_,
| ~~~~~~~~~~~~~~~~
332 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
333 | tp,
| ~~~
334 | control_
| ~~~~~~~~
335 | );
| ~
elasticNet.cpp:373:40: required from here
373 | .method( "optimize", &bfgsEnetSEM::optimize, "Optimizes the model. Expects SEM, labeled vector with starting values, lambda, and alpha")
| ^~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:188:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
188 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:188:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
188 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:188:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
188 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:226:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
226 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:226:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
226 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:226:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
226 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyLASSOGlmnet; smoothPenalty = penaltyRidgeGlmnet; tuning = tuningParametersEnetGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyLASSOGlmnet; smoothPenalty = penaltyRidgeGlmnet; tuning = tuningParametersEnetGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
elasticNet.cpp:209:54: required from ‘Rcpp::List glmnetEnet<sem>::optimize(Rcpp::NumericVector, sem&, arma::rowvec, arma::rowvec) [with sem = SEMCpp; Rcpp::List = Rcpp::Vector<19>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; arma::rowvec = arma::Row<double>]’
209 | lessSEM::fitResults fitResults_ = lessSEM::glmnet(
| ~~~~~~~~~~~~~~~^
210 | SEMFF,
| ~~~~~~
211 | startingValues_,
| ~~~~~~~~~~~~~~~~
212 | penalty_,
| ~~~~~~~~~
213 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
214 | tp,
| ~~~
215 | control_
| ~~~~~~~~
216 | );
| ~
elasticNet.cpp:418:42: required from here
418 | .method( "optimize", &glmnetEnetSEM::optimize, "Optimizes the model. Expects SEM, labeled vector with starting values, lambda, and alpha")
| ^~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c generalPurposeElasticNet.cpp -o generalPurposeElasticNet.o
In file included from ../inst/include/lesstimate/include/lesstimate.h:5,
from ../inst/include/lessSEM.h:4,
from gpFitFramework.h:4,
from generalPurposeElasticNet.cpp:3:
../inst/include/lesstimate/include/lesstimate/ista_class.h: In function ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&)’:
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from generalPurposeElasticNet.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_class.h:10,
from ../inst/include/lesstimate/include/lesstimate.h:7:
../inst/include/lesstimate/include/lesstimate/bfgs.h: In function ‘arma::mat lessSEM::BFGS(const arma::rowvec&, const arma::rowvec&, const arma::mat&, const arma::rowvec&, const arma::rowvec&, bool, double, bool)’:
../inst/include/lesstimate/include/lesstimate/bfgs.h:71:25: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
71 | if (!arma::is_finite(Hessian_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In function ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:9,
from ../inst/include/lesstimate/include/lesstimate.h:8:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h: In member function ‘double lessSEM::penaltyMcpGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersMcpGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h:282:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
282 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:10:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h: In member function ‘double lessSEM::penaltyLSPGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersLspGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h:216:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
216 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate.h:9:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h: In function ‘arma::rowvec lessSEM::bfgsLineSearch(model&, smoothPenalty<T>&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const T&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:188:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
188 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:226:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
226 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersMixedPenalty; U = tuningParametersEnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:308:34: required from here
308 | fitResults fitResults_ = ista(
| ~~~~^
309 | userModel,
| ~~~~~~~~~~
310 | startingValues,
| ~~~~~~~~~~~~~~~
311 | proximalOperatorMixedPenalty_,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
312 | penalty_,
| ~~~~~~~~~
313 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
314 | tp,
| ~~~
315 | smoothTp,
| ~~~~~~~~~
316 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersEnet; U = tuningParametersEnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
generalPurposeElasticNet.cpp:89:52: required from here
89 | lessSEM::fitResults fitResults_ = lessSEM::ista(
| ~~~~~~~~~~~~~^
90 | gpFF,
| ~~~~~
91 | startingValues_,
| ~~~~~~~~~~~~~~~~
92 | proximalOperatorLasso_,
| ~~~~~~~~~~~~~~~~~~~~~~~
93 | penalty_,
| ~~~~~~~~~
94 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
95 | tp,
| ~~~
96 | smoothTp,
| ~~~~~~~~~
97 | controlIsta
| ~~~~~~~~~~~
98 | );
| ~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:131:36: required from here
131 | fitResults fitResults_ = glmnet(
| ~~~~~~^
132 | userModel,
| ~~~~~~~~~~
133 | startingValues,
| ~~~~~~~~~~~~~~~
134 | pen,
| ~~~~
135 | smoothPen,
| ~~~~~~~~~~
136 | tp,
| ~~~
137 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyLASSOGlmnet; smoothPenalty = penaltyRidgeGlmnet; tuning = tuningParametersEnetGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyLASSOGlmnet; smoothPenalty = penaltyRidgeGlmnet; tuning = tuningParametersEnetGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
generalPurposeElasticNet.cpp:231:54: required from here
231 | lessSEM::fitResults fitResults_ = lessSEM::glmnet(
| ~~~~~~~~~~~~~~~^
232 | gpFF,
| ~~~~~
233 | startingValues_,
| ~~~~~~~~~~~~~~~~
234 | penalty_,
| ~~~~~~~~~
235 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
236 | tp,
| ~~~
237 | control_
| ~~~~~~~~
238 | );
| ~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c glmnet_cappedL1.cpp -o glmnet_cappedL1.o
In file included from ../inst/include/lesstimate/include/lesstimate.h:5,
from ../inst/include/lessSEM.h:4,
from SEMFitFramework.h:4,
from glmnet_cappedL1.cpp:4:
../inst/include/lesstimate/include/lesstimate/ista_class.h: In function ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&)’:
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from glmnet_cappedL1.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_class.h:10,
from ../inst/include/lesstimate/include/lesstimate.h:7:
../inst/include/lesstimate/include/lesstimate/bfgs.h: In function ‘arma::mat lessSEM::BFGS(const arma::rowvec&, const arma::rowvec&, const arma::mat&, const arma::rowvec&, const arma::rowvec&, bool, double, bool)’:
../inst/include/lesstimate/include/lesstimate/bfgs.h:71:25: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
71 | if (!arma::is_finite(Hessian_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In function ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:9,
from ../inst/include/lesstimate/include/lesstimate.h:8:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h: In member function ‘double lessSEM::penaltyMcpGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersMcpGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h:282:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
282 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:10:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h: In member function ‘double lessSEM::penaltyLSPGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersLspGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h:216:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
216 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate.h:9:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h: In function ‘arma::rowvec lessSEM::bfgsLineSearch(model&, smoothPenalty<T>&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const T&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:188:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
188 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:226:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
226 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersMixedPenalty; U = tuningParametersEnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:308:34: required from here
308 | fitResults fitResults_ = ista(
| ~~~~^
309 | userModel,
| ~~~~~~~~~~
310 | startingValues,
| ~~~~~~~~~~~~~~~
311 | proximalOperatorMixedPenalty_,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
312 | penalty_,
| ~~~~~~~~~
313 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
314 | tp,
| ~~~
315 | smoothTp,
| ~~~~~~~~~
316 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:131:36: required from here
131 | fitResults fitResults_ = glmnet(
| ~~~~~~^
132 | userModel,
| ~~~~~~~~~~
133 | startingValues,
| ~~~~~~~~~~~~~~~
134 | pen,
| ~~~~
135 | smoothPen,
| ~~~~~~~~~~
136 | tp,
| ~~~
137 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyCappedL1Glmnet; smoothPenalty = noSmoothPenalty<tuningParametersCappedL1Glmnet>; tuning = tuningParametersCappedL1Glmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyCappedL1Glmnet; smoothPenalty = noSmoothPenalty<tuningParametersCappedL1Glmnet>; tuning = tuningParametersCappedL1Glmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
glmnet_cappedL1.cpp:91:56: required from ‘Rcpp::List glmnetCappedL1<sem>::optimize(Rcpp::NumericVector, sem&, double, double) [with sem = SEMCpp; Rcpp::List = Rcpp::Vector<19>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
91 | lessSEM::fitResults fitResults_ = lessSEM::glmnet(
| ~~~~~~~~~~~~~~~^
92 | SEMFF,
| ~~~~~~
93 | startingValues_,
| ~~~~~~~~~~~~~~~~
94 | penalty_,
| ~~~~~~~~~
95 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
96 | tp,
| ~~~
97 | control_
| ~~~~~~~~
98 | );
| ~
glmnet_cappedL1.cpp:136:44: required from here
136 | .method( "optimize", &glmnetCappedL1SEM::optimize, "Optimizes the model. Expects SEM, labeled vector with starting values, lambda, and alpha")
| ^~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c glmnet_generalPurposeMixedPenalty.cpp -o glmnet_generalPurposeMixedPenalty.o
In file included from ../inst/include/lesstimate/include/lesstimate.h:5,
from ../inst/include/lessSEM.h:4,
from gpFitFramework.h:4,
from glmnet_generalPurposeMixedPenalty.cpp:3:
../inst/include/lesstimate/include/lesstimate/ista_class.h: In function ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&)’:
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from glmnet_generalPurposeMixedPenalty.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_class.h:10,
from ../inst/include/lesstimate/include/lesstimate.h:7:
../inst/include/lesstimate/include/lesstimate/bfgs.h: In function ‘arma::mat lessSEM::BFGS(const arma::rowvec&, const arma::rowvec&, const arma::mat&, const arma::rowvec&, const arma::rowvec&, bool, double, bool)’:
../inst/include/lesstimate/include/lesstimate/bfgs.h:71:25: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
71 | if (!arma::is_finite(Hessian_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In function ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:9,
from ../inst/include/lesstimate/include/lesstimate.h:8:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h: In member function ‘double lessSEM::penaltyMcpGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersMcpGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h:282:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
282 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:10:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h: In member function ‘double lessSEM::penaltyLSPGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersLspGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h:216:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
216 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate.h:9:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h: In function ‘arma::rowvec lessSEM::bfgsLineSearch(model&, smoothPenalty<T>&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const T&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:188:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
188 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:226:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
226 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersMixedPenalty; U = tuningParametersEnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:308:34: required from here
308 | fitResults fitResults_ = ista(
| ~~~~^
309 | userModel,
| ~~~~~~~~~~
310 | startingValues,
| ~~~~~~~~~~~~~~~
311 | proximalOperatorMixedPenalty_,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
312 | penalty_,
| ~~~~~~~~~
313 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
314 | tp,
| ~~~
315 | smoothTp,
| ~~~~~~~~~
316 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:131:36: required from here
131 | fitResults fitResults_ = glmnet(
| ~~~~~~^
132 | userModel,
| ~~~~~~~~~~
133 | startingValues,
| ~~~~~~~~~~~~~~~
134 | pen,
| ~~~~
135 | smoothPen,
| ~~~~~~~~~~
136 | tp,
| ~~~
137 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c glmnet_lsp.cpp -o glmnet_lsp.o
In file included from ../inst/include/lesstimate/include/lesstimate.h:5,
from ../inst/include/lessSEM.h:4,
from SEMFitFramework.h:4,
from glmnet_lsp.cpp:4:
../inst/include/lesstimate/include/lesstimate/ista_class.h: In function ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&)’:
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from glmnet_lsp.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_class.h:10,
from ../inst/include/lesstimate/include/lesstimate.h:7:
../inst/include/lesstimate/include/lesstimate/bfgs.h: In function ‘arma::mat lessSEM::BFGS(const arma::rowvec&, const arma::rowvec&, const arma::mat&, const arma::rowvec&, const arma::rowvec&, bool, double, bool)’:
../inst/include/lesstimate/include/lesstimate/bfgs.h:71:25: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
71 | if (!arma::is_finite(Hessian_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In function ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:9,
from ../inst/include/lesstimate/include/lesstimate.h:8:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h: In member function ‘double lessSEM::penaltyMcpGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersMcpGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h:282:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
282 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:10:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h: In member function ‘double lessSEM::penaltyLSPGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersLspGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h:216:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
216 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate.h:9:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h: In function ‘arma::rowvec lessSEM::bfgsLineSearch(model&, smoothPenalty<T>&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const T&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:188:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
188 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:226:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
226 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersMixedPenalty; U = tuningParametersEnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:308:34: required from here
308 | fitResults fitResults_ = ista(
| ~~~~^
309 | userModel,
| ~~~~~~~~~~
310 | startingValues,
| ~~~~~~~~~~~~~~~
311 | proximalOperatorMixedPenalty_,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
312 | penalty_,
| ~~~~~~~~~
313 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
314 | tp,
| ~~~
315 | smoothTp,
| ~~~~~~~~~
316 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:131:36: required from here
131 | fitResults fitResults_ = glmnet(
| ~~~~~~^
132 | userModel,
| ~~~~~~~~~~
133 | startingValues,
| ~~~~~~~~~~~~~~~
134 | pen,
| ~~~~
135 | smoothPen,
| ~~~~~~~~~~
136 | tp,
| ~~~
137 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyLSPGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersLspGlmnet>; tuning = tuningParametersLspGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyLSPGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersLspGlmnet>; tuning = tuningParametersLspGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
glmnet_lsp.cpp:95:56: required from ‘Rcpp::List glmnetLsp<sem>::optimize(Rcpp::NumericVector, sem&, double, double) [with sem = SEMCpp; Rcpp::List = Rcpp::Vector<19>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
95 | lessSEM::fitResults fitResults_ = lessSEM::glmnet(
| ~~~~~~~~~~~~~~~^
96 | SEMFF,
| ~~~~~~
97 | startingValues_,
| ~~~~~~~~~~~~~~~~
98 | penalty_,
| ~~~~~~~~~
99 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
100 | tp,
| ~~~
101 | control_
| ~~~~~~~~
102 | );
| ~
glmnet_lsp.cpp:140:39: required from here
140 | .method( "optimize", &glmnetLspSEM::optimize, "Optimizes the model. Expects SEM, labeled vector with starting values, lambda, and alpha")
| ^~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c glmnet_mcp.cpp -o glmnet_mcp.o
In file included from ../inst/include/lesstimate/include/lesstimate.h:5,
from ../inst/include/lessSEM.h:4,
from SEMFitFramework.h:4,
from glmnet_mcp.cpp:4:
../inst/include/lesstimate/include/lesstimate/ista_class.h: In function ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&)’:
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from glmnet_mcp.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_class.h:10,
from ../inst/include/lesstimate/include/lesstimate.h:7:
../inst/include/lesstimate/include/lesstimate/bfgs.h: In function ‘arma::mat lessSEM::BFGS(const arma::rowvec&, const arma::rowvec&, const arma::mat&, const arma::rowvec&, const arma::rowvec&, bool, double, bool)’:
../inst/include/lesstimate/include/lesstimate/bfgs.h:71:25: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
71 | if (!arma::is_finite(Hessian_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In function ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:9,
from ../inst/include/lesstimate/include/lesstimate.h:8:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h: In member function ‘double lessSEM::penaltyMcpGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersMcpGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h:282:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
282 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:10:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h: In member function ‘double lessSEM::penaltyLSPGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersLspGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h:216:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
216 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate.h:9:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h: In function ‘arma::rowvec lessSEM::bfgsLineSearch(model&, smoothPenalty<T>&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const T&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:188:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
188 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:226:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
226 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersMixedPenalty; U = tuningParametersEnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:308:34: required from here
308 | fitResults fitResults_ = ista(
| ~~~~^
309 | userModel,
| ~~~~~~~~~~
310 | startingValues,
| ~~~~~~~~~~~~~~~
311 | proximalOperatorMixedPenalty_,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
312 | penalty_,
| ~~~~~~~~~
313 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
314 | tp,
| ~~~
315 | smoothTp,
| ~~~~~~~~~
316 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:131:36: required from here
131 | fitResults fitResults_ = glmnet(
| ~~~~~~^
132 | userModel,
| ~~~~~~~~~~
133 | startingValues,
| ~~~~~~~~~~~~~~~
134 | pen,
| ~~~~
135 | smoothPen,
| ~~~~~~~~~~
136 | tp,
| ~~~
137 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyMcpGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMcpGlmnet>; tuning = tuningParametersMcpGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyMcpGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMcpGlmnet>; tuning = tuningParametersMcpGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
glmnet_mcp.cpp:95:54: required from ‘Rcpp::List glmnetMcp<sem>::optimize(Rcpp::NumericVector, sem&, double, double) [with sem = SEMCpp; Rcpp::List = Rcpp::Vector<19>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
95 | lessSEM::fitResults fitResults_ = lessSEM::glmnet(
| ~~~~~~~~~~~~~~~^
96 | SEMFF,
| ~~~~~~
97 | startingValues_,
| ~~~~~~~~~~~~~~~~
98 | penalty_,
| ~~~~~~~~~
99 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
100 | tp,
| ~~~
101 | control_
| ~~~~~~~~
102 | );
| ~
glmnet_mcp.cpp:140:41: required from here
140 | .method( "optimize", &glmnetMcpSEM::optimize, "Optimizes the model. Expects SEM, labeled vector with starting values, lambda, and alpha")
| ^~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c glmnet_mixed.cpp -o glmnet_mixed.o
In file included from ../inst/include/lesstimate/include/lesstimate.h:5,
from ../inst/include/lessSEM.h:4,
from SEMFitFramework.h:4,
from glmnet_mixed.cpp:4:
../inst/include/lesstimate/include/lesstimate/ista_class.h: In function ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&)’:
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from glmnet_mixed.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_class.h:10,
from ../inst/include/lesstimate/include/lesstimate.h:7:
../inst/include/lesstimate/include/lesstimate/bfgs.h: In function ‘arma::mat lessSEM::BFGS(const arma::rowvec&, const arma::rowvec&, const arma::mat&, const arma::rowvec&, const arma::rowvec&, bool, double, bool)’:
../inst/include/lesstimate/include/lesstimate/bfgs.h:71:25: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
71 | if (!arma::is_finite(Hessian_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In function ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:9,
from ../inst/include/lesstimate/include/lesstimate.h:8:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h: In member function ‘double lessSEM::penaltyMcpGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersMcpGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h:282:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
282 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:10:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h: In member function ‘double lessSEM::penaltyLSPGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersLspGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h:216:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
216 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate.h:9:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h: In function ‘arma::rowvec lessSEM::bfgsLineSearch(model&, smoothPenalty<T>&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const T&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:188:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
188 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:226:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
226 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersMixedPenalty; U = tuningParametersEnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:308:34: required from here
308 | fitResults fitResults_ = ista(
| ~~~~^
309 | userModel,
| ~~~~~~~~~~
310 | startingValues,
| ~~~~~~~~~~~~~~~
311 | proximalOperatorMixedPenalty_,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
312 | penalty_,
| ~~~~~~~~~
313 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
314 | tp,
| ~~~
315 | smoothTp,
| ~~~~~~~~~
316 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:131:36: required from here
131 | fitResults fitResults_ = glmnet(
| ~~~~~~^
132 | userModel,
| ~~~~~~~~~~
133 | startingValues,
| ~~~~~~~~~~~~~~~
134 | pen,
| ~~~~
135 | smoothPen,
| ~~~~~~~~~~
136 | tp,
| ~~~
137 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c glmnet_scad.cpp -o glmnet_scad.o
In file included from ../inst/include/lesstimate/include/lesstimate.h:5,
from ../inst/include/lessSEM.h:4,
from SEMFitFramework.h:4,
from glmnet_scad.cpp:4:
../inst/include/lesstimate/include/lesstimate/ista_class.h: In function ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&)’:
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from glmnet_scad.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_class.h:10,
from ../inst/include/lesstimate/include/lesstimate.h:7:
../inst/include/lesstimate/include/lesstimate/bfgs.h: In function ‘arma::mat lessSEM::BFGS(const arma::rowvec&, const arma::rowvec&, const arma::mat&, const arma::rowvec&, const arma::rowvec&, bool, double, bool)’:
../inst/include/lesstimate/include/lesstimate/bfgs.h:71:25: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
71 | if (!arma::is_finite(Hessian_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In function ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:9,
from ../inst/include/lesstimate/include/lesstimate.h:8:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h: In member function ‘double lessSEM::penaltyMcpGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersMcpGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h:282:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
282 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:10:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h: In member function ‘double lessSEM::penaltyLSPGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersLspGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h:216:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
216 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate.h:9:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h: In function ‘arma::rowvec lessSEM::bfgsLineSearch(model&, smoothPenalty<T>&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const T&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:188:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
188 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:226:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
226 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersMixedPenalty; U = tuningParametersEnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:308:34: required from here
308 | fitResults fitResults_ = ista(
| ~~~~^
309 | userModel,
| ~~~~~~~~~~
310 | startingValues,
| ~~~~~~~~~~~~~~~
311 | proximalOperatorMixedPenalty_,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
312 | penalty_,
| ~~~~~~~~~
313 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
314 | tp,
| ~~~
315 | smoothTp,
| ~~~~~~~~~
316 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:131:36: required from here
131 | fitResults fitResults_ = glmnet(
| ~~~~~~^
132 | userModel,
| ~~~~~~~~~~
133 | startingValues,
| ~~~~~~~~~~~~~~~
134 | pen,
| ~~~~
135 | smoothPen,
| ~~~~~~~~~~
136 | tp,
| ~~~
137 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltySCADGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersScadGlmnet>; tuning = tuningParametersScadGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltySCADGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersScadGlmnet>; tuning = tuningParametersScadGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
glmnet_scad.cpp:95:54: required from ‘Rcpp::List glmnetScad<sem>::optimize(Rcpp::NumericVector, sem&, double, double) [with sem = SEMCpp; Rcpp::List = Rcpp::Vector<19>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
95 | lessSEM::fitResults fitResults_ = lessSEM::glmnet(
| ~~~~~~~~~~~~~~~^
96 | SEMFF,
| ~~~~~~
97 | startingValues_,
| ~~~~~~~~~~~~~~~~
98 | penalty_,
| ~~~~~~~~~
99 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
100 | tp,
| ~~~
101 | control_
| ~~~~~~~~
102 | );
| ~
glmnet_scad.cpp:140:42: required from here
140 | .method( "optimize", &glmnetScadSEM::optimize, "Optimizes the model. Expects SEM, labeled vector with starting values, lambda, and alpha")
| ^~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c gradients.cpp -o gradients.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c implied.cpp -o implied.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c impliedDerivatives.cpp -o impliedDerivatives.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c ista_generalPurposeMixedPenalty.cpp -o ista_generalPurposeMixedPenalty.o
In file included from ../inst/include/lesstimate/include/lesstimate.h:5,
from ../inst/include/lessSEM.h:4,
from gpFitFramework.h:4,
from ista_generalPurposeMixedPenalty.cpp:3:
../inst/include/lesstimate/include/lesstimate/ista_class.h: In function ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&)’:
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from ista_generalPurposeMixedPenalty.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_class.h:10,
from ../inst/include/lesstimate/include/lesstimate.h:7:
../inst/include/lesstimate/include/lesstimate/bfgs.h: In function ‘arma::mat lessSEM::BFGS(const arma::rowvec&, const arma::rowvec&, const arma::mat&, const arma::rowvec&, const arma::rowvec&, bool, double, bool)’:
../inst/include/lesstimate/include/lesstimate/bfgs.h:71:25: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
71 | if (!arma::is_finite(Hessian_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In function ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:9,
from ../inst/include/lesstimate/include/lesstimate.h:8:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h: In member function ‘double lessSEM::penaltyMcpGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersMcpGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h:282:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
282 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:10:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h: In member function ‘double lessSEM::penaltyLSPGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersLspGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h:216:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
216 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate.h:9:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h: In function ‘arma::rowvec lessSEM::bfgsLineSearch(model&, smoothPenalty<T>&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const T&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:188:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
188 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:226:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
226 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersMixedPenalty; U = tuningParametersEnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:308:34: required from here
308 | fitResults fitResults_ = ista(
| ~~~~^
309 | userModel,
| ~~~~~~~~~~
310 | startingValues,
| ~~~~~~~~~~~~~~~
311 | proximalOperatorMixedPenalty_,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
312 | penalty_,
| ~~~~~~~~~
313 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
314 | tp,
| ~~~
315 | smoothTp,
| ~~~~~~~~~
316 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:131:36: required from here
131 | fitResults fitResults_ = glmnet(
| ~~~~~~^
132 | userModel,
| ~~~~~~~~~~
133 | startingValues,
| ~~~~~~~~~~~~~~~
134 | pen,
| ~~~~
135 | smoothPen,
| ~~~~~~~~~~
136 | tp,
| ~~~
137 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c ista_lsp.cpp -o ista_lsp.o
In file included from ../inst/include/lesstimate/include/lesstimate.h:5,
from ../inst/include/lessSEM.h:4,
from SEMFitFramework.h:4,
from ista_lsp.cpp:4:
../inst/include/lesstimate/include/lesstimate/ista_class.h: In function ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&)’:
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from ista_lsp.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_class.h:10,
from ../inst/include/lesstimate/include/lesstimate.h:7:
../inst/include/lesstimate/include/lesstimate/bfgs.h: In function ‘arma::mat lessSEM::BFGS(const arma::rowvec&, const arma::rowvec&, const arma::mat&, const arma::rowvec&, const arma::rowvec&, bool, double, bool)’:
../inst/include/lesstimate/include/lesstimate/bfgs.h:71:25: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
71 | if (!arma::is_finite(Hessian_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In function ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:9,
from ../inst/include/lesstimate/include/lesstimate.h:8:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h: In member function ‘double lessSEM::penaltyMcpGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersMcpGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h:282:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
282 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:10:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h: In member function ‘double lessSEM::penaltyLSPGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersLspGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h:216:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
216 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate.h:9:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h: In function ‘arma::rowvec lessSEM::bfgsLineSearch(model&, smoothPenalty<T>&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const T&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:188:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
188 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:226:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
226 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersMixedPenalty; U = tuningParametersEnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:308:34: required from here
308 | fitResults fitResults_ = ista(
| ~~~~^
309 | userModel,
| ~~~~~~~~~~
310 | startingValues,
| ~~~~~~~~~~~~~~~
311 | proximalOperatorMixedPenalty_,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
312 | penalty_,
| ~~~~~~~~~
313 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
314 | tp,
| ~~~
315 | smoothTp,
| ~~~~~~~~~
316 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:131:36: required from here
131 | fitResults fitResults_ = glmnet(
| ~~~~~~^
132 | userModel,
| ~~~~~~~~~~
133 | startingValues,
| ~~~~~~~~~~~~~~~
134 | pen,
| ~~~~
135 | smoothPen,
| ~~~~~~~~~~
136 | tp,
| ~~~
137 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersLSP; U = tuningParametersLSP; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
ista_lsp.cpp:82:52: required from ‘Rcpp::List istaLSP<sem>::optimize(Rcpp::NumericVector, sem&, double, double) [with sem = SEMCpp; Rcpp::List = Rcpp::Vector<19>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
82 | lessSEM::fitResults fitResults_ = lessSEM::ista(
| ~~~~~~~~~~~~~^
83 | SEMFF,
| ~~~~~~
84 | startingValues_,
| ~~~~~~~~~~~~~~~~
85 | proximalOperatorLSP_,
| ~~~~~~~~~~~~~~~~~~~~~
86 | penalty_,
| ~~~~~~~~~
87 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
88 | tp,
| ~~~
89 | smoothTp,
| ~~~~~~~~~
90 | controlIsta
| ~~~~~~~~~~~
91 | );
| ~
ista_lsp.cpp:127:39: required from here
127 | .method( "optimize", &istaLSPSEM::optimize, "Optimizes the model. Expects SEM, labeled vector with starting values, theta, lambda, and alpha")
| ^~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c ista_mcp.cpp -o ista_mcp.o
In file included from ../inst/include/lesstimate/include/lesstimate.h:5,
from ../inst/include/lessSEM.h:4,
from SEMFitFramework.h:4,
from ista_mcp.cpp:4:
../inst/include/lesstimate/include/lesstimate/ista_class.h: In function ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&)’:
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from ista_mcp.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_class.h:10,
from ../inst/include/lesstimate/include/lesstimate.h:7:
../inst/include/lesstimate/include/lesstimate/bfgs.h: In function ‘arma::mat lessSEM::BFGS(const arma::rowvec&, const arma::rowvec&, const arma::mat&, const arma::rowvec&, const arma::rowvec&, bool, double, bool)’:
../inst/include/lesstimate/include/lesstimate/bfgs.h:71:25: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
71 | if (!arma::is_finite(Hessian_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In function ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:9,
from ../inst/include/lesstimate/include/lesstimate.h:8:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h: In member function ‘double lessSEM::penaltyMcpGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersMcpGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h:282:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
282 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:10:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h: In member function ‘double lessSEM::penaltyLSPGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersLspGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h:216:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
216 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate.h:9:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h: In function ‘arma::rowvec lessSEM::bfgsLineSearch(model&, smoothPenalty<T>&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const T&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:188:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
188 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:226:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
226 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersMixedPenalty; U = tuningParametersEnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:308:34: required from here
308 | fitResults fitResults_ = ista(
| ~~~~^
309 | userModel,
| ~~~~~~~~~~
310 | startingValues,
| ~~~~~~~~~~~~~~~
311 | proximalOperatorMixedPenalty_,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
312 | penalty_,
| ~~~~~~~~~
313 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
314 | tp,
| ~~~
315 | smoothTp,
| ~~~~~~~~~
316 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:131:36: required from here
131 | fitResults fitResults_ = glmnet(
| ~~~~~~^
132 | userModel,
| ~~~~~~~~~~
133 | startingValues,
| ~~~~~~~~~~~~~~~
134 | pen,
| ~~~~
135 | smoothPen,
| ~~~~~~~~~~
136 | tp,
| ~~~
137 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersMcp; U = tuningParametersMcp; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
ista_mcp.cpp:95:52: required from ‘Rcpp::List istaMcp<sem>::optimize(Rcpp::NumericVector, sem&, double, double) [with sem = SEMCpp; Rcpp::List = Rcpp::Vector<19>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
95 | lessSEM::fitResults fitResults_ = lessSEM::ista(
| ~~~~~~~~~~~~~^
96 | SEMFF,
| ~~~~~~
97 | startingValues_,
| ~~~~~~~~~~~~~~~~
98 | proximalOperatorMcp_,
| ~~~~~~~~~~~~~~~~~~~~~
99 | penalty_,
| ~~~~~~~~~
100 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
101 | tp,
| ~~~
102 | smoothTp,
| ~~~~~~~~~
103 | controlIsta
| ~~~~~~~~~~~
104 | );
| ~
ista_mcp.cpp:139:37: required from here
139 | .method( "optimize", &istaMcpSEM::optimize, "Optimizes the model. Expects SEM, labeled vector with starting values, theta, lambda, and alpha")
| ^~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c ista_mixed.cpp -o ista_mixed.o
In file included from ../inst/include/lesstimate/include/lesstimate.h:5,
from ../inst/include/lessSEM.h:4,
from SEMFitFramework.h:4,
from ista_mixed.cpp:4:
../inst/include/lesstimate/include/lesstimate/ista_class.h: In function ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&)’:
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from ista_mixed.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_class.h:10,
from ../inst/include/lesstimate/include/lesstimate.h:7:
../inst/include/lesstimate/include/lesstimate/bfgs.h: In function ‘arma::mat lessSEM::BFGS(const arma::rowvec&, const arma::rowvec&, const arma::mat&, const arma::rowvec&, const arma::rowvec&, bool, double, bool)’:
../inst/include/lesstimate/include/lesstimate/bfgs.h:71:25: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
71 | if (!arma::is_finite(Hessian_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In function ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:9,
from ../inst/include/lesstimate/include/lesstimate.h:8:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h: In member function ‘double lessSEM::penaltyMcpGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersMcpGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h:282:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
282 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:10:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h: In member function ‘double lessSEM::penaltyLSPGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersLspGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h:216:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
216 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate.h:9:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h: In function ‘arma::rowvec lessSEM::bfgsLineSearch(model&, smoothPenalty<T>&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const T&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:188:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
188 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:226:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
226 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersMixedPenalty; U = tuningParametersEnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:308:34: required from here
308 | fitResults fitResults_ = ista(
| ~~~~^
309 | userModel,
| ~~~~~~~~~~
310 | startingValues,
| ~~~~~~~~~~~~~~~
311 | proximalOperatorMixedPenalty_,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
312 | penalty_,
| ~~~~~~~~~
313 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
314 | tp,
| ~~~
315 | smoothTp,
| ~~~~~~~~~
316 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:131:36: required from here
131 | fitResults fitResults_ = glmnet(
| ~~~~~~^
132 | userModel,
| ~~~~~~~~~~
133 | startingValues,
| ~~~~~~~~~~~~~~~
134 | pen,
| ~~~~
135 | smoothPen,
| ~~~~~~~~~~
136 | tp,
| ~~~
137 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c ista_scad.cpp -o ista_scad.o
In file included from ../inst/include/lesstimate/include/lesstimate.h:5,
from ../inst/include/lessSEM.h:4,
from SEMFitFramework.h:4,
from ista_scad.cpp:4:
../inst/include/lesstimate/include/lesstimate/ista_class.h: In function ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&)’:
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from ista_scad.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_class.h:10,
from ../inst/include/lesstimate/include/lesstimate.h:7:
../inst/include/lesstimate/include/lesstimate/bfgs.h: In function ‘arma::mat lessSEM::BFGS(const arma::rowvec&, const arma::rowvec&, const arma::mat&, const arma::rowvec&, const arma::rowvec&, bool, double, bool)’:
../inst/include/lesstimate/include/lesstimate/bfgs.h:71:25: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
71 | if (!arma::is_finite(Hessian_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In function ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:9,
from ../inst/include/lesstimate/include/lesstimate.h:8:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h: In member function ‘double lessSEM::penaltyMcpGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersMcpGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_mcp.h:282:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
282 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate/glmnet_penalties.h:10:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h: In member function ‘double lessSEM::penaltyLSPGlmnet::getZ(unsigned int, const arma::rowvec&, const arma::rowvec&, const arma::rowvec&, const arma::mat&, const lessSEM::tuningParametersLspGlmnet&)’:
../inst/include/lesstimate/include/lesstimate/glmnet_lsp.h:216:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
216 | if (!arma::is_finite(z[i]))
| ~~~~~~~~~~~~~~~^~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
In file included from ../inst/include/lesstimate/include/lesstimate.h:9:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h: In function ‘arma::rowvec lessSEM::bfgsLineSearch(model&, smoothPenalty<T>&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const T&, double, double, double, int, int)’:
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:188:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
188 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/bfgsOptim.h:226:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
226 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersMixedPenalty; U = tuningParametersEnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:308:34: required from here
308 | fitResults fitResults_ = ista(
| ~~~~^
309 | userModel,
| ~~~~~~~~~~
310 | startingValues,
| ~~~~~~~~~~~~~~~
311 | proximalOperatorMixedPenalty_,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
312 | penalty_,
| ~~~~~~~~~
313 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
314 | tp,
| ~~~
315 | smoothTp,
| ~~~~~~~~~
316 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h: In instantiation of ‘arma::rowvec lessSEM::glmnetLineSearch(model&, nonsmoothPenalty&, smoothPenalty&, const arma::rowvec&, const stringVector&, const arma::rowvec&, double, const arma::rowvec&, const arma::mat&, const tuning&, double, double, double, int, int) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; arma::rowvec = arma::Row<double>; stringVector = Rcpp::Vector<16>; arma::mat = arma::Mat<double>]’:
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:491:38: required from ‘lessSEM::fitResults lessSEM::glmnet(model&, numericVector, nonsmoothPenalty&, smoothPenalty&, const tuning&, const controlGLMNET&) [with nonsmoothPenalty = penaltyMixedGlmnet; smoothPenalty = noSmoothPenalty<tuningParametersMixedGlmnet>; tuning = tuningParametersMixedGlmnet; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
491 | parameters_k = glmnetLineSearch(model_,
| ~~~~~~~~~~~~~~~~^~~~~~~~
492 | penalty_,
| ~~~~~~~~~
493 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
494 | parameters_kMinus1,
| ~~~~~~~~~~~~~~~~~~~
495 | parameterLabels,
| ~~~~~~~~~~~~~~~~
496 | direction,
| ~~~~~~~~~~
497 | fit_kMinus1,
| ~~~~~~~~~~~~
498 | gradients_kMinus1,
| ~~~~~~~~~~~~~~~~~~
499 | Hessian_kMinus1,
| ~~~~~~~~~~~~~~~~
500 |
|
501 | tuningParameters,
| ~~~~~~~~~~~~~~~~~
502 |
|
503 | control_.stepSize,
| ~~~~~~~~~~~~~~~~~~
504 | control_.sigma,
| ~~~~~~~~~~~~~~~
505 | control_.gamma,
| ~~~~~~~~~~~~~~~
506 | control_.maxIterLine,
| ~~~~~~~~~~~~~~~~~~~~~
507 | control_.verbose);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/simplified_interfaces.h:131:36: required from here
131 | fitResults fitResults_ = glmnet(
| ~~~~~~^
132 | userModel,
| ~~~~~~~~~~
133 | startingValues,
| ~~~~~~~~~~~~~~~
134 | pen,
| ~~~~
135 | smoothPen,
| ~~~~~~~~~~
136 | tp,
| ~~~
137 | controlOptimizer);
| ~~~~~~~~~~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:306:27: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/glmnet_class.h:346:29: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
346 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h: In instantiation of ‘lessSEM::fitResults lessSEM::ista(model&, numericVector, proximalOperator<T>&, penalty<T>&, smoothPenalty<U>&, const T&, const U&, const control&) [with T = tuningParametersScad; U = tuningParametersScad; numericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’:
ista_scad.cpp:102:52: required from ‘Rcpp::List istaScad<sem>::optimize(Rcpp::NumericVector, sem&, double, double) [with sem = SEMCpp; Rcpp::List = Rcpp::Vector<19>; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]’
102 | lessSEM::fitResults fitResults_ = lessSEM::ista(
| ~~~~~~~~~~~~~^
103 | SEMFF,
| ~~~~~~
104 | startingValues_,
| ~~~~~~~~~~~~~~~~
105 | proximalOperatorScad_,
| ~~~~~~~~~~~~~~~~~~~~~~
106 | penalty_,
| ~~~~~~~~~
107 | smoothPenalty_,
| ~~~~~~~~~~~~~~~
108 | tp,
| ~~~
109 | smoothTp,
| ~~~~~~~~~
110 | controlIsta
| ~~~~~~~~~~~
111 | );
| ~
ista_scad.cpp:146:40: required from here
146 | .method( "optimize", &istaScadSEM::optimize, "Optimizes the model. Expects SEM, labeled vector with starting values, theta, lambda, and alpha")
| ^~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:306:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
306 | if (!arma::is_finite(fit_k))
| ~~~~~~~~~~~~~~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:318:29: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
318 | if (!arma::is_finite(penalizedFit_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
../inst/include/lesstimate/include/lesstimate/ista_class.h:369:31: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = Mat<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
369 | if (!arma::is_finite(gradients_k))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
181 | is_finite(const Base<typename T1::elem_type,T1>& X)
| ^~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c logicalMatch.cpp -o logicalMatch.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c mgSEM.cpp -o mgSEM.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c multivariateNormal.cpp -o multivariateNormal.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c parameters.cpp -o parameters.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c scores.cpp -o scores.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o lessSEM.so RcppExports.o SEM.o WLS.o callFitFunction.o cappedL1.o dataset.o derivativeStructure.o elasticNet.o generalPurposeElasticNet.o glmnet_cappedL1.o glmnet_generalPurposeMixedPenalty.o glmnet_lsp.o glmnet_mcp.o glmnet_mixed.o glmnet_scad.o gradients.o implied.o impliedDerivatives.o ista_generalPurposeMixedPenalty.o ista_lsp.o ista_mcp.o ista_mixed.o ista_scad.o logicalMatch.o mgSEM.o multivariateNormal.o parameters.o scores.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyKT5T2/R.INSTALL28ac55609e107e/lessSEM/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyKT5T2/R.INSTALL28ac55609e107e/lessSEM/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyKT5T2/R.INSTALL28ac55609e107e/lessSEM/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-lessSEM/00new/lessSEM/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘lessSEM’
finding HTML links ... done
AIC-Rcpp_SEMCpp-method html
AIC-Rcpp_mgSEM-method html
AIC-gpRegularized-method html
AIC-regularizedSEM-method html
AIC-regularizedSEMMixedPenalty-method html
AIC-regularizedSEMWithCustomPenalty-method
html
BIC-Rcpp_SEMCpp-method html
BIC-Rcpp_mgSEM-method html
BIC-gpRegularized-method html
BIC-regularizedSEM-method html
BIC-regularizedSEMMixedPenalty-method html
BIC-regularizedSEMWithCustomPenalty-method
html
Rcpp_SEMCpp-class html
Rcpp_bfgsEnetMgSEM-class html
Rcpp_bfgsEnetSEM-class html
Rcpp_glmnetCappedL1MgSEM-class html
Rcpp_glmnetCappedL1SEM-class html
Rcpp_glmnetEnetGeneralPurpose-class html
Rcpp_glmnetEnetGeneralPurposeCpp-class
html
Rcpp_glmnetEnetMgSEM-class html
Rcpp_glmnetEnetSEM-class html
Rcpp_glmnetLspMgSEM-class html
Rcpp_glmnetLspSEM-class html
Rcpp_glmnetMcpMgSEM-class html
Rcpp_glmnetMcpSEM-class html
Rcpp_glmnetScadMgSEM-class html
Rcpp_glmnetScadSEM-class html
Rcpp_istaCappedL1GeneralPurpose-class html
Rcpp_istaCappedL1GeneralPurposeCpp-class
html
Rcpp_istaCappedL1SEM-class html
Rcpp_istaCappedL1mgSEM-class html
Rcpp_istaEnetGeneralPurpose-class html
Rcpp_istaEnetGeneralPurposeCpp-class html
Rcpp_istaEnetMgSEM-class html
Rcpp_istaEnetSEM-class html
Rcpp_istaLSPMgSEM-class html
Rcpp_istaLSPSEM-class html
Rcpp_istaLspGeneralPurpose-class html
Rcpp_istaLspGeneralPurposeCpp-class html
Rcpp_istaMcpGeneralPurpose-class html
Rcpp_istaMcpGeneralPurposeCpp-class html
Rcpp_istaMcpMgSEM-class html
Rcpp_istaMcpSEM-class html
Rcpp_istaMixedPenaltySEM-class html
Rcpp_istaMixedPenaltymgSEM-class html
Rcpp_istaScadGeneralPurpose-class html
Rcpp_istaScadGeneralPurposeCpp-class html
Rcpp_istaScadMgSEM-class html
Rcpp_istaScadSEM-class html
Rcpp_mgSEM-class html
SEMCpp html
adaptiveLasso html
addCappedL1 html
addElasticNet html
addLasso html
addLsp html
addMcp html
addScad html
bfgs html
bfgsEnet html
bfgsEnetMgSEM html
bfgsEnetSEM html
callFitFunction html
cappedL1 html
coef-Rcpp_SEMCpp-method html
coef-Rcpp_mgSEM-method html
coef-cvRegularizedSEM-method html
coef-gpRegularized-method html
coef-regularizedSEM-method html
coef-regularizedSEMMixedPenalty-method
html
coef-regularizedSEMWithCustomPenalty-method
html
controlBFGS html
controlGlmnet html
controlIsta html
covariances html
createSubsets html
curveLambda html
cvAdaptiveLasso html
cvCappedL1 html
cvElasticNet html
cvLasso html
cvLsp html
cvMcp html
cvRegularizedSEM-class html
cvRidge html
cvRidgeBfgs html
cvScad html
cvScaler html
cvSmoothAdaptiveLasso html
cvSmoothElasticNet html
cvSmoothLasso html
dot-SEMFromLavaan html
dot-SEMdata html
dot-SEMdataWLS html
dot-adaptBreakingForWls html
dot-addMeanStructure html
dot-checkLavaanModel html
dot-checkPenalties html
dot-compileTransformations html
dot-computeInitialHessian html
dot-createMultiGroupTransformations html
dot-createParameterTable html
dot-createRcppTransformationFunction html
dot-createTransformations html
dot-cvRegularizeSEMInternal html
dot-cvRegularizeSmoothSEMInternal html
dot-cvregsem2LavaanParameters html
dot-defineDerivatives html
dot-extractParametersFromSyntax html
dot-extractSEMFromLavaan html
dot-fit html
dot-fitElasticNetMix html
dot-fitFunction html
dot-fitMix html
dot-getGradients html
dot-getHessian html
dot-getMaxLambda_C html
dot-getParameters html
dot-getRawData html
dot-getScores html
dot-gpGetMaxLambda html
dot-gpOptimizationInternal html
dot-gradientFunction html
dot-initializeMultiGroupSEMForRegularization
html
dot-initializeSEMForRegularization html
dot-initializeWeights html
dot-labelLavaanParameters html
dot-lavaan2regsemLabels html
dot-likelihoodRatioFit html
dot-makeSingleLine html
dot-multiGroupSEMFromLavaan html
dot-noDotDotDot html
dot-penaltyTypes html
dot-reduceSyntax html
dot-regularizeSEMInternal html
dot-regularizeSEMWithCustomPenaltyRsolnp
html
dot-regularizeSmoothSEMInternal html
dot-ridgeGradient html
dot-ridgeHessian html
dot-ridgeValue html
dot-setAMatrix html
dot-setFmatrix html
dot-setMVector html
dot-setParameters html
dot-setSMatrix html
dot-setupMulticore html
dot-smoothAdaptiveLASSOGradient html
dot-smoothAdaptiveLASSOHessian html
dot-smoothAdaptiveLASSOValue html
dot-smoothCappedL1Value html
dot-smoothElasticNetGradient html
dot-smoothElasticNetHessian html
dot-smoothElasticNetValue html
dot-smoothLASSOGradient html
dot-smoothLASSOHessian html
dot-smoothLASSOValue html
dot-smoothLspValue html
dot-smoothMcpValue html
dot-smoothScadValue html
dot-standardErrors html
dot-updateLavaan html
dot-useElasticNet html
elasticNet html
estimates-cvRegularizedSEM-method html
estimates-regularizedSEM-method html
estimates-regularizedSEMMixedPenalty-method
html
estimates html
fit html
fitIndices-cvRegularizedSEM-method html
fitIndices-regularizedSEM-method html
fitIndices-regularizedSEMMixedPenalty-method
html
fitIndices html
getLavaanParameters html
getTuningParameterConfiguration html
glmnetCappedL1MgSEM html
glmnetCappedL1SEM html
glmnetEnetGeneralPurpose html
glmnetEnetGeneralPurposeCpp html
glmnetEnetMgSEM html
glmnetEnetSEM html
glmnetLspMgSEM html
glmnetLspSEM html
glmnetMcpMgSEM html
glmnetMcpSEM html
glmnetMixedMgSEM html
glmnetMixedPenaltyGeneralPurpose html
glmnetMixedPenaltyGeneralPurposeCpp html
glmnetMixedSEM html
glmnetScadMgSEM html
glmnetScadSEM html
gpAdaptiveLasso html
gpAdaptiveLassoCpp html
gpCappedL1 html
gpCappedL1Cpp html
gpElasticNet html
gpElasticNetCpp html
gpLasso html
gpLassoCpp html
gpLsp html
gpLspCpp html
gpMcp html
gpMcpCpp html
gpRegularized-class html
gpRidge html
gpRidgeCpp html
gpScad html
gpScadCpp html
istaCappedL1SEM html
istaCappedL1mgSEM html
istaEnetGeneralPurpose html
istaEnetGeneralPurposeCpp html
istaEnetMgSEM html
istaEnetSEM html
istaLSPMgSEM html
istaLSPSEM html
istaMcpMgSEM html
istaMcpSEM html
istaMixedPenaltyGeneralPurpose html
istaMixedPenaltyGeneralPurposeCpp html
istaMixedPenaltySEM html
istaMixedPenaltymgSEM html
istaScadMgSEM html
istaScadSEM html
lasso html
lavaan2lslxLabels html
lessSEM html
lessSEM2Lavaan html
lessSEMCoef-class html
loadings html
logLik-Rcpp_SEMCpp-method html
logLik-Rcpp_mgSEM-method html
logLikelihood-class html
logicalMatch html
lsp html
makePtrs html
mcp html
mcpPenalty_C html
mgSEM html
mixedPenalty html
modifyModel html
newTau html
plot-cvRegularizedSEM-missing-method html
plot-gpRegularized-missing-method html
plot-regularizedSEM-missing-method html
plot-stabSel-missing-method html
regressions html
regsem2LavaanParameters html
regularizedSEM-class html
regularizedSEMMixedPenalty-class html
regularizedSEMWithCustomPenalty-class html
ridge html
ridgeBfgs html
scad html
scadPenalty_C html
show-Rcpp_SEMCpp-method html
show-Rcpp_mgSEM-method html
show-cvRegularizedSEM-method html
show-gpRegularized-method html
show-lessSEMCoef-method html
show-logLikelihood-method html
show-regularizedSEM-method html
show-regularizedSEMMixedPenalty-method
html
show-stabSel-method html
simulateExampleData html
smoothAdaptiveLasso html
smoothElasticNet html
smoothLasso html
stabSel-class html
stabilitySelection html
summary-cvRegularizedSEM-method html
summary-gpRegularized-method html
summary-regularizedSEM-method html
summary-regularizedSEMMixedPenalty-method
html
summary-regularizedSEMWithCustomPenalty-method
html
variances html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lessSEM)