* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘landscapemetrics’ ...
** package ‘landscapemetrics’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpGmE3EF/R.INSTALL3368c736776b68/landscapemetrics/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_cclabel.cpp -o rcpp_cclabel.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_create_neighborhood.cpp -o rcpp_create_neighborhood.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_get_boundaries.cpp -o rcpp_get_boundaries.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_get_circle.cpp -o rcpp_get_circle.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_get_class_index_map.cpp -o rcpp_get_class_index_map.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_get_composition_vector.cpp -o rcpp_get_composition_vector.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_get_coocurrence_matrix.cpp -o rcpp_get_coocurrence_matrix.o
rcpp_get_coocurrence_matrix.cpp: In function ‘Rcpp::IntegerMatrix rcpp_get_coocurrence_matrix(const Rcpp::IntegerMatrix&, arma::imat)’:
rcpp_get_coocurrence_matrix.cpp:43:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
43 | neig_col < ncols &&
| ~~~~~~~~~^~~~~~~
rcpp_get_coocurrence_matrix.cpp:44:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
44 | neig_row < nrows) {
| ~~~~~~~~~^~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_get_coocurrence_matrix_diag.cpp -o rcpp_get_coocurrence_matrix_diag.o
rcpp_get_coocurrence_matrix_diag.cpp: In function ‘Rcpp::IntegerVector rcpp_get_coocurrence_matrix_diag(const Rcpp::IntegerMatrix&, arma::imat)’:
rcpp_get_coocurrence_matrix_diag.cpp:43:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
43 | neig_col < ncols &&
| ~~~~~~~~~^~~~~~~
rcpp_get_coocurrence_matrix_diag.cpp:44:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
44 | neig_row < nrows) {
| ~~~~~~~~~^~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_get_coocurrence_matrix_single.cpp -o rcpp_get_coocurrence_matrix_single.o
rcpp_get_coocurrence_matrix_single.cpp: In function ‘Rcpp::IntegerMatrix rcpp_get_coocurrence_matrix_single(const Rcpp::IntegerMatrix&, arma::imat, int)’:
rcpp_get_coocurrence_matrix_single.cpp:48:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
48 | neig_col < ncols &&
| ~~~~~~~~~^~~~~~~
rcpp_get_coocurrence_matrix_single.cpp:49:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
49 | neig_row < nrows) {
| ~~~~~~~~~^~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_get_coocurrence_vector.cpp -o rcpp_get_coocurrence_vector.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_get_entropy.cpp -o rcpp_get_entropy.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_get_nearest_neighbor.cpp -o rcpp_get_nearest_neighbor.o
rcpp_get_nearest_neighbor.cpp: In function ‘Rcpp::NumericVector find_min(const Rcpp::NumericMatrix&, int, int)’:
rcpp_get_nearest_neighbor.cpp:59:17: warning: ‘id0’ may be used uninitialized [-Wmaybe-uninitialized]
59 | dist_vec(1) = id0;
| ~~~~~~~~~~~~^~~~~
rcpp_get_nearest_neighbor.cpp:19:12: note: ‘id0’ was declared here
19 | int k, id0;
| ^~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_get_unique_values.cpp -o rcpp_get_unique_values.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_smallest_circle.cpp -o rcpp_smallest_circle.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o landscapemetrics.so RcppExports.o rcpp_cclabel.o rcpp_create_neighborhood.o rcpp_get_boundaries.o rcpp_get_circle.o rcpp_get_class_index_map.o rcpp_get_composition_vector.o rcpp_get_coocurrence_matrix.o rcpp_get_coocurrence_matrix_diag.o rcpp_get_coocurrence_matrix_single.o rcpp_get_coocurrence_vector.o rcpp_get_entropy.o rcpp_get_nearest_neighbor.o rcpp_get_unique_values.o rcpp_smallest_circle.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpGmE3EF/R.INSTALL3368c736776b68/landscapemetrics/src'
make[1]: Entering directory '/tmp/RtmpGmE3EF/R.INSTALL3368c736776b68/landscapemetrics/src'
make[1]: Leaving directory '/tmp/RtmpGmE3EF/R.INSTALL3368c736776b68/landscapemetrics/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-landscapemetrics/00new/landscapemetrics/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘landscapemetrics’
finding HTML links ... done
augusta_nlcd html
calculate_correlation html
calculate_lsm html
check_landscape html
construct_buffer html
data_info html
extract_lsm html
get_adjacencies html
get_area_patches html
get_boundaries html
get_centroids html
get_circumscribingcircle html
get_class_patches html
get_complexity html
get_enn_patch html
get_nearestneighbour html
get_patches html
get_perimeter_patch html
get_points html
get_unique_values html
landscape html
landscape_as_list html
landscapemetrics html
list_lsm html
lsm_abbreviations_names html
lsm_c_ai html
lsm_c_area_cv html
lsm_c_area_mn html
lsm_c_area_sd html
lsm_c_ca html
lsm_c_cai_cv html
lsm_c_cai_mn html
lsm_c_cai_sd html
lsm_c_circle_cv html
lsm_c_circle_mn html
lsm_c_circle_sd html
lsm_c_clumpy html
lsm_c_cohesion html
lsm_c_contig_cv html
lsm_c_contig_mn html
lsm_c_contig_sd html
lsm_c_core_cv html
lsm_c_core_mn html
lsm_c_core_sd html
lsm_c_cpland html
lsm_c_dcad html
lsm_c_dcore_cv html
lsm_c_dcore_mn html
lsm_c_dcore_sd html
lsm_c_division html
lsm_c_ed html
lsm_c_enn_cv html
lsm_c_enn_mn html
lsm_c_enn_sd html
lsm_c_frac_cv html
lsm_c_frac_mn html
lsm_c_frac_sd html
lsm_c_gyrate_cv html
lsm_c_gyrate_mn html
lsm_c_gyrate_sd html
lsm_c_iji html
lsm_c_lpi html
lsm_c_lsi html
lsm_c_mesh html
lsm_c_ndca html
lsm_c_nlsi html
lsm_c_np html
lsm_c_pafrac html
lsm_c_para_cv html
lsm_c_para_mn html
lsm_c_para_sd html
lsm_c_pd html
lsm_c_pladj html
lsm_c_pland html
lsm_c_shape_cv html
lsm_c_shape_mn html
lsm_c_shape_sd html
lsm_c_split html
lsm_c_tca html
lsm_c_te html
lsm_l_ai html
lsm_l_area_cv html
lsm_l_area_mn html
lsm_l_area_sd html
lsm_l_cai_cv html
lsm_l_cai_mn html
lsm_l_cai_sd html
lsm_l_circle_cv html
lsm_l_circle_mn html
lsm_l_circle_sd html
lsm_l_cohesion html
lsm_l_condent html
lsm_l_contag html
lsm_l_contig_cv html
lsm_l_contig_mn html
lsm_l_contig_sd html
lsm_l_core_cv html
lsm_l_core_mn html
lsm_l_core_sd html
lsm_l_dcad html
lsm_l_dcore_cv html
lsm_l_dcore_mn html
lsm_l_dcore_sd html
lsm_l_division html
lsm_l_ed html
lsm_l_enn_cv html
lsm_l_enn_mn html
lsm_l_enn_sd html
lsm_l_ent html
lsm_l_frac_cv html
lsm_l_frac_mn html
lsm_l_frac_sd html
lsm_l_gyrate_cv html
lsm_l_gyrate_mn html
lsm_l_gyrate_sd html
lsm_l_iji html
lsm_l_joinent html
lsm_l_lpi html
lsm_l_lsi html
lsm_l_mesh html
lsm_l_msidi html
lsm_l_msiei html
lsm_l_mutinf html
lsm_l_ndca html
lsm_l_np html
lsm_l_pafrac html
lsm_l_para_cv html
lsm_l_para_mn html
lsm_l_para_sd html
lsm_l_pd html
lsm_l_pladj html
lsm_l_pr html
lsm_l_prd html
lsm_l_relmutinf html
lsm_l_rpr html
lsm_l_shape_cv html
lsm_l_shape_mn html
lsm_l_shape_sd html
lsm_l_shdi html
lsm_l_shei html
lsm_l_sidi html
lsm_l_siei html
lsm_l_split html
lsm_l_ta html
lsm_l_tca html
lsm_l_te html
lsm_p_area html
lsm_p_cai html
lsm_p_circle html
lsm_p_contig html
lsm_p_core html
lsm_p_enn html
lsm_p_frac html
lsm_p_gyrate html
lsm_p_ncore html
lsm_p_para html
lsm_p_perim html
lsm_p_shape html
matrix_to_raster html
options_landscapemetrics html
pad_raster html
podlasie_ccilc html
points_as_mat html
prepare_extras html
proj_info html
raster_to_points html
rcpp_cell_from_xy html
rcpp_create_neighborhood html
rcpp_get_nearest_neighbor html
rcpp_xy_from_matrix html
sample_lsm html
show_cores html
show_correlation html
show_lsm html
show_patches html
spatialize_lsm html
unpad_raster html
window_lsm html
finding level-2 HTML links ... done
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (landscapemetrics)