* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘koopman.dmd’ ... ** this is package ‘koopman.dmd’ version ‘0.2.2’ ** package ‘koopman.dmd’ successfully unpacked and MD5 sums checked ** using staged installation ** using rustc 1.95.0 (59807616e 2026-04-14) (built from a source tarball) ** using cargo 1.95.0 (f2d3ce0bd 2026-03-21) (built from a source tarball) ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src' gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c entrypoint.c -o entrypoint.o # CRAN build machines have no network access, so the whole dependency tree ships # in vendor.tar.xz and cargo is pointed at it and run with --offline. See # https://cran.r-project.org/web/packages/using_rust.html # # The source-replacement config goes in CARGO_HOME, NOT beside the manifest: # cargo looks for .cargo/config.toml relative to its working directory, which is # src/ here, so a config at src/rust/.cargo/config.toml is never read. The # vendor directory is given as an absolute path for the same reason. mkdir -p /home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src/.cargo export PATH="/home/hornik/bin:/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \ export CARGO_HOME=/home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src/.cargo && \ if [ -f ./rust/vendor.tar.xz ]; then \ tar xf ./rust/vendor.tar.xz -C ./rust && \ printf '[source.crates-io]\nreplace-with = "vendored-sources"\n\n[source.vendored-sources]\ndirectory = "/home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src/rust/vendor"\n' > /home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src/.cargo/config.toml && \ cargo build --lib --release --offline --locked -j 2 \ --manifest-path=./rust/Cargo.toml --target-dir ./rust/target; \ else \ cargo build --lib --release -j 2 \ --manifest-path=./rust/Cargo.toml --target-dir ./rust/target; \ fi Compiling proc-macro2 v1.0.107 Compiling libc v0.2.189 Compiling quote v1.0.47 Compiling unicode-ident v1.0.24 Compiling libm v0.2.16 Compiling autocfg v1.5.1 Compiling zerocopy v0.8.55 Compiling num-traits v0.2.19 Compiling cfg-if v1.0.4 Compiling getrandom v0.2.17 Compiling rand_core v0.6.4 Compiling crossbeam-utils v0.8.22 Compiling bytemuck v1.25.2 Compiling ppv-lite86 v0.2.21 Compiling syn v2.0.119 Compiling rand_chacha v0.3.1 Compiling rand v0.8.7 Compiling num-complex v0.4.6 Compiling crossbeam-epoch v0.9.20 Compiling nano-gemm-codegen v0.1.0 Compiling crossbeam-deque v0.8.7 Compiling version_check v0.9.5 Compiling rayon-core v1.13.0 Compiling pulp v0.21.5 Compiling reborrow v0.5.5 Compiling paste v1.0.15 Compiling either v1.17.0 Compiling rayon v1.12.0 Compiling bitflags v2.13.1 Compiling dyn-stack-macros v0.1.3 Compiling dyn-stack v0.13.2 Compiling raw-cpuid v11.6.0 Compiling once_cell v1.21.4 Compiling memchr v2.8.3 Compiling ucd-trie v0.1.7 Compiling seq-macro v0.3.6 Compiling syn v1.0.109 Compiling gemm-common v0.18.2 Compiling pest v2.8.8 Compiling nano-gemm-core v0.1.0 Compiling pest_meta v2.8.8 Compiling pest_generator v2.8.8 Compiling equator-macro v0.4.2 Compiling interpol v0.2.1 Compiling nano-gemm-f32 v0.1.0 Compiling nano-gemm-f64 v0.1.0 Compiling nano-gemm-c64 v0.1.0 Compiling nano-gemm-c32 v0.1.0 Compiling crossbeam-queue v0.3.13 Compiling crossbeam-channel v0.5.16 Compiling num-integer v0.1.46 Compiling syn v3.0.3 Compiling defer v0.2.1 Compiling private-gemm-x86 v0.1.20 Compiling crossbeam v0.8.4 Compiling num-bigint v0.4.8 Compiling equator v0.4.2 Compiling pest_derive v2.8.8 Compiling equator-macro v0.2.1 Compiling atomic-wait v1.1.0 Compiling extendr-ffi v0.9.0 Compiling spindle v0.2.6 Compiling equator v0.2.2 Compiling py_literal v0.4.0 Compiling gemm-f64 v0.18.2 Compiling gemm-c64 v0.18.2 Compiling gemm-f32 v0.18.2 Compiling gemm-c32 v0.18.2 Compiling qd v0.7.7 Compiling faer-macros v0.21.0 Compiling num_cpus v1.17.0 Compiling byteorder v1.5.0 Compiling thiserror v2.0.19 Compiling generativity v1.2.1 Compiling faer-traits v0.22.1 Compiling npyz v0.8.4 Compiling gemm v0.18.2 Compiling nano-gemm v0.1.3 Compiling thiserror-impl v2.0.19 Compiling rand_distr v0.4.3 Compiling lazy_static v1.5.0 Compiling extendr-api v0.9.0 Compiling extendr-macros v0.9.0 Compiling faer v0.22.6 Compiling readonly v0.2.14 Compiling koopman-dmd v0.2.0 Compiling koopman-dmd-r v0.2.0 (/home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src/rust) Finished `release` profile [optimized] target(s) in 3m 49s # Reclaim space unless a developer asked to keep it (NOT_CRAN=true). if [ "" != "true" ]; then \ rm -Rf /home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src/.cargo /home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src/rust/vendor && \ rm -Rf ./rust/target/release/build; \ fi gcc-16 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o koopman.dmd.so entrypoint.o -L./rust/target/release -lkoopman_dmd_r -lresolv -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR rm -Rf /home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src/.cargo /home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src/rust/vendor ./rust/target/release/libkoopman_dmd_r.a make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-koopman.dmd/00new/koopman.dmd/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘koopman.dmd’ finding HTML links ... done classify_phase_space html dmd html dmd_dominant_modes html dmd_error html dmd_reconstruct html dmd_residual html dmd_spectrum html dmd_stability html dmdc html dmdc_spectrum html dmdc_stability html extended_standard_map html froeschle_map html generate_trajectory html gla html gla_reconstruct html hankel_dmd html hankel_reconstruct html harmonic_time_average html henon_map html hta_convergence html koopman.dmd-package html logistic_map html mesochronic_compute html predict.dmd html predict.dmdc html predict.gla html predict.hankel_dmd html standard_map html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (koopman.dmd)