* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘koopman.dmd’ ...
** this is package ‘koopman.dmd’ version ‘0.2.2’
** package ‘koopman.dmd’ successfully unpacked and MD5 sums checked
** using staged installation
** using rustc 1.95.0 (59807616e 2026-04-14) (built from a source tarball)
** using cargo 1.95.0 (f2d3ce0bd 2026-03-21) (built from a source tarball)
** libs
using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src'
gcc-16 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c entrypoint.c -o entrypoint.o
# CRAN build machines have no network access, so the whole dependency tree ships
# in vendor.tar.xz and cargo is pointed at it and run with --offline. See
# https://cran.r-project.org/web/packages/using_rust.html
#
# The source-replacement config goes in CARGO_HOME, NOT beside the manifest:
# cargo looks for .cargo/config.toml relative to its working directory, which is
# src/ here, so a config at src/rust/.cargo/config.toml is never read. The
# vendor directory is given as an absolute path for the same reason.
mkdir -p /home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src/.cargo
export PATH="/home/hornik/bin:/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \
export CARGO_HOME=/home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src/.cargo && \
if [ -f ./rust/vendor.tar.xz ]; then \
tar xf ./rust/vendor.tar.xz -C ./rust && \
printf '[source.crates-io]\nreplace-with = "vendored-sources"\n\n[source.vendored-sources]\ndirectory = "/home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src/rust/vendor"\n' > /home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src/.cargo/config.toml && \
cargo build --lib --release --offline --locked -j 2 \
--manifest-path=./rust/Cargo.toml --target-dir ./rust/target; \
else \
cargo build --lib --release -j 2 \
--manifest-path=./rust/Cargo.toml --target-dir ./rust/target; \
fi
Compiling proc-macro2 v1.0.107
Compiling libc v0.2.189
Compiling quote v1.0.47
Compiling unicode-ident v1.0.24
Compiling libm v0.2.16
Compiling autocfg v1.5.1
Compiling zerocopy v0.8.55
Compiling num-traits v0.2.19
Compiling cfg-if v1.0.4
Compiling getrandom v0.2.17
Compiling rand_core v0.6.4
Compiling crossbeam-utils v0.8.22
Compiling bytemuck v1.25.2
Compiling ppv-lite86 v0.2.21
Compiling syn v2.0.119
Compiling rand_chacha v0.3.1
Compiling rand v0.8.7
Compiling num-complex v0.4.6
Compiling crossbeam-epoch v0.9.20
Compiling nano-gemm-codegen v0.1.0
Compiling crossbeam-deque v0.8.7
Compiling version_check v0.9.5
Compiling rayon-core v1.13.0
Compiling pulp v0.21.5
Compiling reborrow v0.5.5
Compiling paste v1.0.15
Compiling either v1.17.0
Compiling rayon v1.12.0
Compiling bitflags v2.13.1
Compiling dyn-stack-macros v0.1.3
Compiling dyn-stack v0.13.2
Compiling raw-cpuid v11.6.0
Compiling once_cell v1.21.4
Compiling memchr v2.8.3
Compiling ucd-trie v0.1.7
Compiling seq-macro v0.3.6
Compiling syn v1.0.109
Compiling gemm-common v0.18.2
Compiling pest v2.8.8
Compiling nano-gemm-core v0.1.0
Compiling pest_meta v2.8.8
Compiling pest_generator v2.8.8
Compiling equator-macro v0.4.2
Compiling interpol v0.2.1
Compiling nano-gemm-f32 v0.1.0
Compiling nano-gemm-f64 v0.1.0
Compiling nano-gemm-c64 v0.1.0
Compiling nano-gemm-c32 v0.1.0
Compiling crossbeam-queue v0.3.13
Compiling crossbeam-channel v0.5.16
Compiling num-integer v0.1.46
Compiling syn v3.0.3
Compiling defer v0.2.1
Compiling private-gemm-x86 v0.1.20
Compiling crossbeam v0.8.4
Compiling num-bigint v0.4.8
Compiling equator v0.4.2
Compiling pest_derive v2.8.8
Compiling equator-macro v0.2.1
Compiling atomic-wait v1.1.0
Compiling extendr-ffi v0.9.0
Compiling spindle v0.2.6
Compiling equator v0.2.2
Compiling py_literal v0.4.0
Compiling gemm-f64 v0.18.2
Compiling gemm-c64 v0.18.2
Compiling gemm-f32 v0.18.2
Compiling gemm-c32 v0.18.2
Compiling qd v0.7.7
Compiling faer-macros v0.21.0
Compiling num_cpus v1.17.0
Compiling byteorder v1.5.0
Compiling thiserror v2.0.19
Compiling generativity v1.2.1
Compiling faer-traits v0.22.1
Compiling npyz v0.8.4
Compiling gemm v0.18.2
Compiling nano-gemm v0.1.3
Compiling thiserror-impl v2.0.19
Compiling rand_distr v0.4.3
Compiling lazy_static v1.5.0
Compiling extendr-api v0.9.0
Compiling extendr-macros v0.9.0
Compiling faer v0.22.6
Compiling readonly v0.2.14
Compiling koopman-dmd v0.2.0
Compiling koopman-dmd-r v0.2.0 (/home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src/rust)
Finished `release` profile [optimized] target(s) in 3m 49s
# Reclaim space unless a developer asked to keep it (NOT_CRAN=true).
if [ "" != "true" ]; then \
rm -Rf /home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src/.cargo /home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src/rust/vendor && \
rm -Rf ./rust/target/release/build; \
fi
gcc-16 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o koopman.dmd.so entrypoint.o -L./rust/target/release -lkoopman_dmd_r -lresolv -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
rm -Rf /home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src/.cargo /home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src/rust/vendor ./rust/target/release/libkoopman_dmd_r.a
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnRIvY6/R.INSTALL23584c51b248a8/koopman.dmd/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-koopman.dmd/00new/koopman.dmd/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘koopman.dmd’
finding HTML links ... done
classify_phase_space html
dmd html
dmd_dominant_modes html
dmd_error html
dmd_reconstruct html
dmd_residual html
dmd_spectrum html
dmd_stability html
dmdc html
dmdc_spectrum html
dmdc_stability html
extended_standard_map html
froeschle_map html
generate_trajectory html
gla html
gla_reconstruct html
hankel_dmd html
hankel_reconstruct html
harmonic_time_average html
henon_map html
hta_convergence html
koopman.dmd-package html
logistic_map html
mesochronic_compute html
predict.dmd html
predict.dmdc html
predict.gla html
predict.hankel_dmd html
standard_map html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (koopman.dmd)