* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘jointseg’ ...
** this is package ‘jointseg’ version ‘1.0.3’
** package ‘jointseg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-8) 14.3.0’
using C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnTyxTq/R.INSTALL29444365010f8/jointseg/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Heap.cpp -o Heap.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Node.cpp -o Node.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Rwrappers.cc -o Rwrappers.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c colibri.cc -o colibri.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c liste.cc -o liste.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o jointseg.so Heap.o Node.o Rwrappers.o colibri.o init.o liste.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnTyxTq/R.INSTALL29444365010f8/jointseg/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnTyxTq/R.INSTALL29444365010f8/jointseg/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnTyxTq/R.INSTALL29444365010f8/jointseg/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-jointseg/00new/jointseg/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘jointseg’
    finding HTML links ... done
    Fpsn                                    html  
    PSSeg                                   html  
    anotherBkp                              html  
    binMissingValues                        html  
    defaultWeights                          html  
    doCBS                                   html  
    doDynamicProgramming                    html  
    doGFLars                                html  
    doPSCBS                                 html  
    doPSCN                                  html  
    doRBS                                   html  
    estimateSd                              html  
    getCopyNumberDataByResampling           html  
    getTpFp                                 html  
    getUnivJ                                html  
    getUnivStat                             html  
    jointSeg                                html  
    leftMultiplyByInvXAtXA                  html  
    leftMultiplyByXt                        html  
    mapPositionsBack                        html  
    modelSelection                          html  
    multiplyXtXBySparse                     html  
    oneBkp                                  html  
    plotSeg                                 html  
    prof                                    html  
    pruneByDP                               html  
    randomProfile                           html  
    retour_sn                               html  
    segmentByGFLars                         html  
    segmentByRBS                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (jointseg)