• using R version 4.5.3 beta (2026-03-02 r89519)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.3.0-12) 14.3.0     GNU Fortran (Debian 14.3.0-12) 14.3.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘ivolcano/DESCRIPTION’ ... OK
• this is package ‘ivolcano’ version ‘0.0.5’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... INFO Packages suggested but not available for checking:   'clusterProfiler', 'enrichplot'
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘ivolcano’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [12s/14s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [8s/11s] OK Examples with CPU (user + system) or elapsed time > 5s          user system elapsed ivolcano 5.63 0.327 8.627
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [52s/53s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘ivolcano.qmd’ using html  [31m processing file: ivolcano.qmd  [39m [31mError in `library()`: ! there is no package called 'clusterProfiler' Backtrace:     ▆  1. └─base::library(clusterProfiler) [39m [31m  [39m [31m Quitting from ivolcano.qmd:277-324 [pathway-volcano-linkage] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [39m [31m~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `library()`: ! there is no package called 'clusterProfiler' --- Backtrace:     ▆  1. └─base::library(clusterProfiler) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  [39m [31mExecution halted  [39m [33mWARN: Error encountered when rendering files [39m Error: processing vignette 'ivolcano.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error in `quarto_render()`: ✖ Error returned by quarto CLI.   -----------------------------         processing file: ivolcano.qmd    [31mError in `library()`: [39m   ! there is no package called 'clusterProfiler'   Backtrace:   ▆   1. └─base::library(clusterProfiler)      Quitting from ivolcano.qmd:277-324 [pathway-volcano-linkage]   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [31m~~~~~~~~~~~~~~~~~~~~ [39m   <error/rlang_error>   Error in `library()`:   ! there is no package called 'clusterProfiler'   ---   Backtrace:   ▆   1. └─base::library(clusterProfiler)   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~       [31mExecution halted [39m    [33mWARN: Error encountered when rendering files [39m    Caused by error: ! System command 'quarto' failed --- failed re-building ‘ivolcano.qmd’ SUMMARY: processing the following file failed:   ‘ivolcano.qmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR