* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ips’ ...
** package ‘ips’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘ips’
    finding HTML links ... done
    DNAbin2index                            html  
    finding level-2 HTML links ... done

    EmptyCells                              html  
    aliscore                                html  
    beastLog                                html  
    blastn                                  html  
    code.simple.gaps                        html  
    collapseUnsupportedEdges                html  
    combMyTree                              html  
    del.miss                                html  
    deleteGaps                              html  
    descendants                             html  
    fixNodes                                html  
    forceEqualTipHeights                    html  
    gblocks                                 html  
    index2DNAbin                            html  
    ips-internal                            html  
    ips-package                             html  
    ips.16S                                 html  
    ips.28S                                 html  
    ips.cox1                                html  
    ips.tree                                html  
    mafft                                   html  
    mafft.merge                             html  
    mrbayes                                 html  
    mrbayes.lset                            html  
    mrbayes.mcmc                            html  
    mrbayes.prset                           html  
    multistate                              html  
    neighboringPairs                        html  
    ntip                                    html  
    oi                                      html  
    partitionfinder                         html  
    pathd8                                  html  
    phylo2mafft                             html  
    phylo2mst                               html  
    pis                                     html  
    prank                                   html  
    raxml                                   html  
    raxml.partitions                        html  
    rbeauti                                 html  
    rc                                      html  
    read                                    html  
    read.beast                              html  
    read.beast.table                        html  
    sister                                  html  
    splitIntoClades                         html  
    terminalSisters                         html  
    tipHeights                              html  
    traitRate                               html  
    trimEnds                                html  
    unlistFirstLevel                        html  
    write.fas                               html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ips)