* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘immunarch’ ...
** this is package ‘immunarch’ version ‘0.10.3’
** package ‘immunarch’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprBPDGY/R.INSTALL24bb15419aef70/immunarch/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fill_functions.cpp -o fill_functions.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o immunarch.so RcppExports.o fill_functions.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprBPDGY/R.INSTALL24bb15419aef70/immunarch/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprBPDGY/R.INSTALL24bb15419aef70/immunarch/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprBPDGY/R.INSTALL24bb15419aef70/immunarch/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-immunarch/00new/immunarch/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘immunarch’
finding HTML links ... done
aa_properties html
aa_table html
add_class html
airr_clonality html
airr_diversity html
airr_public html
airr_stats html
annotate_clonality html
apply_symm html
bcrdata html
bunch_translate html
check_distribution html
coding html
dbAnnotate html
dbLoad html
dot-quant_column_choice html
entropy html
fixVis html
geneUsage html
geneUsageAnalysis html
gene_segments html
gene_stats html
getKmers html
get_immunarch_news html
group_from_metadata html
has_class html
im_common_args html
immdata html
immunarch_v1_updates html
immunr_data_format html
immunr_hclust html
immunr_pca html
inc_overlap html
list_immunarch_news html
matrixdiagcopy html
pubRep html
pubRepApply html
pubRepFilter html
pubRepStatistics html
public_matrix html
register_immunarch_method html
repAlignLineage html
repClonalFamily html
repClonality html
repDiversity html
repExplore html
repFilter html
repGermline html
repLoad html
repOverlap html
repOverlapAnalysis html
repSample html
repSave html
repSomaticHypermutation html
select_barcodes html
select_clusters html
seqCluster html
seqDist html
set_pb html
spectratype html
split_to_kmers html
switch_type html
top html
trackClonotypes html
vis html
vis.clonal_family html
vis.clonal_family_tree html
vis.immunr_chao1 html
vis.immunr_clonal_prop html
vis.immunr_dynamics html
vis.immunr_exp_vol html
vis.immunr_gene_usage html
vis.immunr_hclust html
vis.immunr_inc_overlap html
vis.immunr_kmeans html
vis.immunr_kmer_table html
vis.immunr_mds html
vis.immunr_ov_matrix html
vis.immunr_public_repertoire html
vis.immunr_public_statistics html
vis.step_failure_ignored html
vis_bar html
vis_box html
vis_circos html
vis_heatmap html
vis_heatmap2 html
vis_hist html
vis_immunr_kmer_profile_main html
vis_public_clonotypes html
vis_public_frequencies html
vis_textlogo html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (immunarch)