* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ibdsim2’ ...
** this is package ‘ibdsim2’ version ‘2.3.1’
** package ‘ibdsim2’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp9BzeLD/R.INSTALL3875202a6a2989/ibdsim2/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ibdsim2.cpp -o ibdsim2.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ibdsim2.so RcppExports.o ibdsim2.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp9BzeLD/R.INSTALL3875202a6a2989/ibdsim2/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp9BzeLD/R.INSTALL3875202a6a2989/ibdsim2/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp9BzeLD/R.INSTALL3875202a6a2989/ibdsim2/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ibdsim2/00new/ibdsim2/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘ibdsim2’
    finding HTML links ... done
    convertPos                              html  
    customMap                               html  
    estimateCoeffs                          html  
    extractIds                              html  
    findPattern                             html  
    haploDraw                               html  
    ibdsim                                  html  
    ibdsim2-package                         html  
    karyoDiploid                            html  
    karyoHaploid                            html  
    karyogram2                              html  
    launchApp                               html  
    legacy_decode19                         html  
    loadMap                                 html  
    maplengths                              html  
    plotSegmentDistribution                 html  
    profileSimIBD                           html  
    realised                                html  
    segmentStats                            html  
    uniformMap                              html  
    zeroIBD                                 html  
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ibdsim2)