* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘iCellR’ ...
** package ‘iCellR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpB7dfL2/R.INSTALL3f617f6e3820a4/iCellR/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c jaccard_coeff.cpp -o jaccard_coeff.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o iCellR.so RcppExports.o jaccard_coeff.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpB7dfL2/R.INSTALL3f617f6e3820a4/iCellR/src'
make[1]: Entering directory '/tmp/RtmpB7dfL2/R.INSTALL3f617f6e3820a4/iCellR/src'
make[1]: Leaving directory '/tmp/RtmpB7dfL2/R.INSTALL3f617f6e3820a4/iCellR/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-iCellR/00new/iCellR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘iCellR’
finding HTML links ... done
Rphenograph html
add.10x.image html
add.adt html
add.vdj html
adt.rna.merge html
bubble.gg.plot html
capture.image.10x html
cc html
cell.cycle html
cell.filter html
cell.gating html
cell.type.pred html
change.clust html
clono.plot html
clust.avg.exp html
clust.cond.info html
clust.ord html
clust.rm html
clust.stats.plot html
cluster.plot html
data.aggregation html
data.scale html
down.sample html
find.dim.genes html
findMarkers html
find_neighbors html
g2m.phase html
gate.to.clust html
gene.plot html
gene.stats html
gg.cor html
heatmap.gg.plot html
hto.anno html
i.score html
iba html
iclust html
load.h5 html
load10x html
make.bed html
make.gene.model html
make.obj html
myImp html
norm.adt html
norm.data html
opt.pcs.plot html
prep.vdj html
pseudotime html
pseudotime.knetl html
pseudotime.tree html
qc.stats html
run.anchor html
run.cca html
run.clustering html
run.diff.exp html
run.diffusion.map html
run.impute html
run.knetl html
run.mnn html
run.pc.tsne html
run.pca html
run.phenograph html
run.tsne html
run.umap html
finding level-2 HTML links ... done
s.phase html
spatial.plot html
stats.plot html
top.markers html
vdj.stats html
volcano.ma.plot html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (iCellR)