* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘hmm.discnp’ ...
** package ‘hmm.discnp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/Rtmpj02YoQ/R.INSTALL3e1cb0f912f3d/hmm.discnp/src'
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c afun.f -o afun.o
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afun.f:2:68:
2 | subroutine afun(fy,xispd,tpm,epsilon,n,nstate,wrk,xlc,alpha,nr)
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Warning: Unused dummy argument ‘nr’ at (1) [-Wunused-dummy-argument]
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c bfun.f -o bfun.o
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gfortran-13 -fpic -g -O2 -Wall -mtune=native -c getgl.f -o getgl.o
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gfortran-13 -fpic -g -O2 -Wall -mtune=native -c gethgl.f -o gethgl.o
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180 | 23065 continue
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149 | 23049 continue
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136 | 23047 continue
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138 | 23045 continue
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88 | 23029 continue
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96 | 23025 continue
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98 | 23021 continue
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100 | 23019 continue
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156 | 23017 continue
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53 | 23013 continue
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44 | 23007 continue
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46 | 23003 continue
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48 | 23001 continue
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gfortran-13 -fpic -g -O2 -Wall -mtune=native -c getl.f -o getl.o
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37 | 23013 continue
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28 | 23011 continue
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gfortran-13 -fpic -g -O2 -Wall -mtune=native -c gfun.f -o gfun.o
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24 | 23009 continue
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gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c recurse.f -o recurse.o
recurse.f:41:5:
41 | 23009 continue
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43 | 23007 continue
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45 | 23005 continue
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33 | 23001 continue
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gfortran-13 -fpic -g -O2 -Wall -mtune=native -c xfun.f -o xfun.o
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34 | 23015 continue
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36 | 23013 continue
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26 | 23011 continue
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28 | 23009 continue
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18 | 23005 continue
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20 | 23003 continue
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39 | 23001 continue
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gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o hmm.discnp.so afun.o bfun.o getgl.o gethgl.o getl.o gfun.o init.o recurse.o xfun.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpj02YoQ/R.INSTALL3e1cb0f912f3d/hmm.discnp/src'
make[1]: Entering directory '/tmp/Rtmpj02YoQ/R.INSTALL3e1cb0f912f3d/hmm.discnp/src'
make[1]: Leaving directory '/tmp/Rtmpj02YoQ/R.INSTALL3e1cb0f912f3d/hmm.discnp/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-hmm.discnp/00new/hmm.discnp/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘hmm.discnp’
finding HTML links ... done
SydColDisc html
anova.hmm.discnp html
ccprSim html
cnvrtRho html
fitted.hmm.discnp html
hmm html
hmm.discnp-internal html
hydroDat html
lesionCount html
logLikHmm html
misstify html
mps html
nafracCalc html
pr html
predict.hmm.discnp html
rhmm html
scovmat html
sp html
squantCI html
update.hmm.discnp html
viterbi html
weissData html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hmm.discnp)