* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘hisse’ ...
** package ‘hisse’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-24) 13.2.0’
make[1]: Entering directory '/tmp/RtmpL6nYk6/R.INSTALL22764476308dea/hisse/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bisse-ext-derivs.c -o bisse-ext-derivs.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c canonical-musse-ext-derivs.c -o canonical-musse-ext-derivs.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c canonical_geosse-ext-derivs.c -o canonical_geosse-ext-derivs.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fbisse-ext-derivs.c -o fbisse-ext-derivs.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fcanonical_geosse-ext-derivs.c -o fcanonical_geosse-ext-derivs.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fgeohisse-ext-derivs.c -o fgeohisse-ext-derivs.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fhisse-ext-derivs.c -o fhisse-ext-derivs.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fnotclasse-ext-derivs.c -o fnotclasse-ext-derivs.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fnotclasse-more-ext-derivs.c -o fnotclasse-more-ext-derivs.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c geohisse-ext-derivs.c -o geohisse-ext-derivs.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hisse-ext-derivs.c -o hisse-ext-derivs.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hissenull-ext-derivs.c -o hissenull-ext-derivs.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misse-ext-derivs.c -o misse-ext-derivs.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c muhisse-ext-derivs.c -o muhisse-ext-derivs.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c notclasse-ext-derivs.c -o notclasse-ext-derivs.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c notclasse-more-ext-derivs.c -o notclasse-more-ext-derivs.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o hisse.so bisse-ext-derivs.o canonical-musse-ext-derivs.o canonical_geosse-ext-derivs.o fbisse-ext-derivs.o fcanonical_geosse-ext-derivs.o fgeohisse-ext-derivs.o fhisse-ext-derivs.o fnotclasse-ext-derivs.o fnotclasse-more-ext-derivs.o geohisse-ext-derivs.o hisse-ext-derivs.o hissenull-ext-derivs.o misse-ext-derivs.o muhisse-ext-derivs.o notclasse-ext-derivs.o notclasse-more-ext-derivs.o registerDynamicSymbol.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpL6nYk6/R.INSTALL22764476308dea/hisse/src'
make[1]: Entering directory '/tmp/RtmpL6nYk6/R.INSTALL22764476308dea/hisse/src'
make[1]: Leaving directory '/tmp/RtmpL6nYk6/R.INSTALL22764476308dea/hisse/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-hisse/00new/hisse/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘hisse’
finding HTML links ... done
AddFossilPoints html
AddStratIntervals html
GeoHiSSE html
GeoHiSSE.old html
GetAICWeights html
GetFossils html
MiSSE html
MiSSEGreedy html
MiSSENet html
MuHiSSE html
PlotMisseSpace html
ProcessSimSample html
ProcessSimStrat html
PruneRedundantModels html
SimulateGeoHiSSE html
SummarizeMiSSEGreedy html
TipCorrelation html
TranslateParsMakerGeoHiSSE html
generateMiSSEGreedyCombinations html
hisse html
hisse.old html
hisseNull4.old html
makeGeoHiSSELikelihood html
makeHiSSELikelihood html
marginRecon.old html
marginReconGeoSSE html
marginReconGeoSSE.old html
marginReconHiSSE html
marginReconMiSSE html
marginReconMuHiSSE html
modelAveRates html
plotGeoHiSSE html
plotHisse html
plotMiSSE html
plotMuHiSSE html
simToPhylo html
simulateHisse html
supportRegion.old html
supportRegionGeoSSE html
supportRegionGeoSSE.old html
supportRegionHiSSE html
supportRegionMiSSE html
supportRegionMuHiSSE html
transMat html
transMatMakerGeoHiSSE html
transMatMakerHiSSE html
transMatMakerMuHiSSE html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘hisse’ as ‘hisse_2.1.11_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (hisse)