* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘hdnom’ ...
** package ‘hdnom’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpH7ymAr/R.INSTALLf8b437abaac75/hdnom/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hdnom-init.c -o hdnom-init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survAUC_Cham_Diao.c -o survAUC_Cham_Diao.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survAUC_SongZhou.c -o survAUC_SongZhou.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survAUC_UNO.c -o survAUC_UNO.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o hdnom.so hdnom-init.o survAUC_Cham_Diao.o survAUC_SongZhou.o survAUC_UNO.o utils.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpH7ymAr/R.INSTALLf8b437abaac75/hdnom/src'
make[1]: Entering directory '/tmp/RtmpH7ymAr/R.INSTALLf8b437abaac75/hdnom/src'
make[1]: Leaving directory '/tmp/RtmpH7ymAr/R.INSTALLf8b437abaac75/hdnom/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-hdnom/00new/hdnom/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘hdnom’
finding HTML links ... done
as_nomogram html
calibrate html
calibrate_external html
calibrate_external_surv_prob_true html
calibrate_surv_prob_true html
compare_by_calibrate html
compare_by_validate html
fit_aenet html
fit_alasso html
fit_enet html
fit_flasso html
fit_lasso html
fit_mcp html
fit_mnet html
fit_scad html
fit_snet html
glmnet_basesurv html
glmnet_calibrate_external_surv_prob_pred
html
glmnet_calibrate_surv_prob_pred html
glmnet_survcurve html
glmnet_tune_alpha html
glmnet_validate_external_tauc html
glmnet_validate_tauc html
hdnom-package html
infer_variable_type html
kmplot html
kmplot_raw html
logrank_test html
ncvreg_basesurv html
ncvreg_calibrate_external_surv_prob_pred
html
ncvreg_calibrate_surv_prob_pred html
ncvreg_survcurve html
ncvreg_tune_gamma html
ncvreg_tune_gamma_alpha html
ncvreg_validate_external_tauc html
ncvreg_validate_tauc html
palette_aaas html
palette_jco html
palette_lancet html
palette_npg html
penalized_basesurv html
penalized_calibrate_external_surv_prob_pred
html
penalized_calibrate_surv_prob_pred html
penalized_survcurve html
penalized_tune_lambda html
penalized_validate_external_tauc html
penalized_validate_tauc html
plot.hdnom.calibrate html
plot.hdnom.calibrate.external html
plot.hdnom.compare.calibrate html
plot.hdnom.compare.validate html
plot.hdnom.nomogram html
plot.hdnom.validate html
plot.hdnom.validate.external html
predict.hdnom.model html
print.hdnom.calibrate html
print.hdnom.calibrate.external html
print.hdnom.compare.calibrate html
print.hdnom.compare.validate html
print.hdnom.model html
print.hdnom.nomogram html
print.hdnom.validate html
print.hdnom.validate.external html
smart html
smarto html
summary.hdnom.calibrate html
summary.hdnom.calibrate.external html
summary.hdnom.compare.calibrate html
summary.hdnom.compare.validate html
summary.hdnom.validate html
summary.hdnom.validate.external html
theme_hdnom html
validate html
validate_external html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hdnom)