* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘haplo.stats’ ...
** package ‘haplo.stats’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpdvWqAW/R.INSTALL3b2e11186c1f8f/haplo.stats/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c groupsum.c -o groupsum.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c haplo.stats_init.c -o haplo.stats_init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c haplo_em_pin.c -o haplo_em_pin.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c louis_info.c -o louis_info.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c seqhap.c -o seqhap.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o haplo.stats.so groupsum.o haplo.stats_init.o haplo_em_pin.o louis_info.o seqhap.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpdvWqAW/R.INSTALL3b2e11186c1f8f/haplo.stats/src'
make[1]: Entering directory '/tmp/RtmpdvWqAW/R.INSTALL3b2e11186c1f8f/haplo.stats/src'
make[1]: Leaving directory '/tmp/RtmpdvWqAW/R.INSTALL3b2e11186c1f8f/haplo.stats/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-haplo.stats/00new/haplo.stats/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘haplo.stats’
    finding HTML links ... done
    Ginv                                    html  
    anova.haplo.glm                         html  
    chisq.power                             html  
    f.power                                 html  
    find.haplo.beta.qt                      html  
    fitted.haplo.glm                        html  
    geno.count.pairs                        html  
    geno1to2                                html  
    get.hapPair                             html  
    hapPower.demo                           html  
    haplo.cc                                html  
    haplo.design                            html  
    haplo.em                                html  
    haplo.em.control                        html  
    haplo.em.fitter                         html  
    haplo.glm                               html  
    haplo.glm.control                       html  
    haplo.group                             html  
    haplo.hash                              html  
    haplo.model.frame                       html  
    haplo.power.cc                          html  
    haplo.power.qt                          html  
    haplo.scan                              html  
    haplo.score                             html  
    haplo.score.merge                       html  
    haplo.score.slide                       html  
    hla.demo                                html  
    internalHaploStats                      html  
    locator.haplo                           html  
    locus                                   html  
    louis.info                              html  
    na.geno.keep                            html  
    plot.haplo.score                        html  
    plot.haplo.score.slide                  html  
    plot.seqhap                             html  
    print.haplo.cc                          html  
    print.haplo.em                          html  
    print.haplo.group                       html  
    print.haplo.scan                        html  
    print.haplo.score                       html  
    print.haplo.score.merge                 html  
    print.haplo.score.slide                 html  
    printBanner                             html  
    residuals.haplo.glm                     html  
    score.sim.control                       html  
    seqhap                                  html  
    seqhap.dat                              html  
    setupGeno                               html  
    summary.haplo.em                        html  
    summary.haplo.glm                       html  
    summaryGeno                             html  
    vcov.haplo.glm                          html  
    x.sexcheck                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (haplo.stats)