* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘hagis’ ...
** this is package ‘hagis’ version ‘3.1.12’
** package ‘hagis’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘hagis’
    finding HTML links ... done
    P_sojae_survey                          html  
    autoplot.hagis.complexities             html  
    autoplot.hagis.gene.summary             html  
    calculate_complexities                  html  
    calculate_diversities                   html  
    create_binary_matrix                    html  
    diversities_table                       html  
Rd warning: diversities_table.Rd:19: missing link ‘pander’
Rd warning: diversities_table.Rd:15: missing link ‘pandoc.table’
    hagis-package                           html  
    individual_pathotypes                   html  
Rd warning: individual_pathotypes.Rd:19: missing link ‘pander’
Rd warning: individual_pathotypes.Rd:15: missing link ‘pander’
    reexports                               html  
    sample_meta                             html  
    summarize_gene                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hagis)