Install log for 'hSDM'

* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘hSDM’ ...
** package ‘hSDM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpsfsVkB/R.INSTALL29dbd940761f1b/hSDM/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG `gsl-config --cflags`  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hSDM.Nmixture.K.c -o hSDM.Nmixture.K.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG `gsl-config --cflags`  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hSDM.Nmixture.c -o hSDM.Nmixture.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG `gsl-config --cflags`  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hSDM.Nmixture.iCAR.c -o hSDM.Nmixture.iCAR.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG `gsl-config --cflags`  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hSDM.ZIB.c -o hSDM.ZIB.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG `gsl-config --cflags`  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hSDM.ZIB.iCAR.alteration.c -o hSDM.ZIB.iCAR.alteration.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG `gsl-config --cflags`  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hSDM.ZIB.iCAR.c -o hSDM.ZIB.iCAR.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG `gsl-config --cflags`  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hSDM.ZIP.c -o hSDM.ZIP.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG `gsl-config --cflags`  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hSDM.ZIP.iCAR.alteration.c -o hSDM.ZIP.iCAR.alteration.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG `gsl-config --cflags`  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hSDM.ZIP.iCAR.c -o hSDM.ZIP.iCAR.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG `gsl-config --cflags`  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hSDM.binomial.c -o hSDM.binomial.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG `gsl-config --cflags`  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hSDM.binomial.iCAR.c -o hSDM.binomial.iCAR.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG `gsl-config --cflags`  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hSDM.poisson.c -o hSDM.poisson.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG `gsl-config --cflags`  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hSDM.poisson.iCAR.c -o hSDM.poisson.iCAR.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG `gsl-config --cflags`  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hSDM.siteocc.c -o hSDM.siteocc.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG `gsl-config --cflags`  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hSDM.siteocc.iCAR.c -o hSDM.siteocc.iCAR.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG `gsl-config --cflags`  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hSDM_init.c -o hSDM_init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG `gsl-config --cflags`  -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c useful.c -o useful.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o hSDM.so hSDM.Nmixture.K.o hSDM.Nmixture.o hSDM.Nmixture.iCAR.o hSDM.ZIB.o hSDM.ZIB.iCAR.alteration.o hSDM.ZIB.iCAR.o hSDM.ZIP.o hSDM.ZIP.iCAR.alteration.o hSDM.ZIP.iCAR.o hSDM.binomial.o hSDM.binomial.iCAR.o hSDM.poisson.o hSDM.poisson.iCAR.o hSDM.siteocc.o hSDM.siteocc.iCAR.o hSDM_init.o useful.o -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpsfsVkB/R.INSTALL29dbd940761f1b/hSDM/src'
make[1]: Entering directory '/tmp/RtmpsfsVkB/R.INSTALL29dbd940761f1b/hSDM/src'
make[1]: Leaving directory '/tmp/RtmpsfsVkB/R.INSTALL29dbd940761f1b/hSDM/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-hSDM/00new/hSDM/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘hSDM’
    finding HTML links ... done
    altitude                                html  
    cfr.env                                 html  
    data.Kery2010                           html  
    datacells.Latimer2006                   html  
    frogs                                   html  
    hSDM-package                            html  
    hSDM.Nmixture.K                         html  
    hSDM.Nmixture                           html  
    hSDM.Nmixture.iCAR                      html  
    hSDM.ZIB                                html  
    hSDM.ZIB.iCAR                           html  
    hSDM.ZIB.iCAR.alteration                html  
    hSDM.ZIP                                html  
    hSDM.ZIP.iCAR                           html  
    hSDM.ZIP.iCAR.alteration                html  
    hSDM.binomial                           html  
    hSDM.binomial.iCAR                      html  
    hSDM.poisson                            html  
    hSDM.poisson.iCAR                       html  
    hSDM.siteocc                            html  
    hSDM.siteocc.iCAR                       html  
    logit                                   html  
    neighbors.Latimer2006                   html  
    predict.hSDM                            html  
    punc10                                  html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hSDM)