* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘grandR’ ...
** package ‘grandR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpGqemtT/R.INSTALL134aa03fc14c12/grandR/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fastsparsemat.c -o fastsparsemat.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c packagename_init.c -o packagename_init.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o grandR.so fastsparsemat.o packagename_init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpGqemtT/R.INSTALL134aa03fc14c12/grandR/src'
make[1]: Entering directory '/tmp/RtmpGqemtT/R.INSTALL134aa03fc14c12/grandR/src'
make[1]: Leaving directory '/tmp/RtmpGqemtT/R.INSTALL134aa03fc14c12/grandR/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-grandR/00new/grandR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘grandR’
finding HTML links ... done
Analyses html
AnalyzeGeneSets html
ApplyContrasts html
CalibrateEffectiveLabelingTimeKineticFit
html
CalibrateEffectiveLabelingTimeMatchHalflives
html
ClassifyGenes html
Coldata html
ComputeAbsolute html
ComputeColumnStatistics html
ComputeExpressionPercentage html
ComputeNonConstantParam html
ComputeNtrPosteriorQuantile html
ComputePseudoNtr html
ComputeSteadyStateHalfLives html
ComputeSummaryStatistics html
Condition html
CreateConvolutionTable html
CreatePdfs html
CreatePseudobulkTable html
DESeq2BIC html
DefaultSlot html
Defer html
Design html
DesignSemantics html
EstimateRegulation html
FilterGenes html
FindReferences html
Findno4sUPairs html
FitKinetics html
FitKineticsGeneLeastSquares html
FitKineticsGeneLogSpaceLinear html
FitKineticsGeneNtr html
FitKineticsGeneSnapshot html
FitKineticsPulseR html
FitKineticsSnapshot html
FormatCorrelation html
GeneInfo html
Genes html
GetAnalysisTable html
GetContrasts html
GetData html
GetDiagnosticParameters html
GetMatrix html
GetPairContrasts html
GetSignificantGenes html
GetSummarizeMatrix html
GetTable html
IsParallel html
LFC html
LikelihoodRatioTest html
ListGeneSets html
MAPlot html
MakeColdata html
Normalize html
NormalizeBaseline html
Pairwise html
PairwiseDESeq2 html
PlotAnalyses html
PlotConversionFreq html
PlotGeneGroupsBars html
PlotGeneGroupsPoints html
PlotGeneOldVsNew html
PlotGeneProgressiveTimecourse html
PlotGeneSnapshotTimecourse html
PlotGeneTotalVsNtr html
PlotHeatmap html
PlotMismatchPositionForSample html
PlotMismatchPositionForType html
PlotModelCompareConv html
PlotModelCompareErr html
PlotModelCompareErrPrior html
PlotModelCompareLL html
PlotModelCompareNtr html
PlotModelConv html
PlotModelErr html
PlotModelLabelTimeCourse html
PlotModelNtr html
PlotModelShape html
PlotPCA html
PlotProfileLikelihood html
PlotScatter html
PlotSimulation html
PlotTypeDistribution html
Plots html
PoolColumns html
ReadCounts html
ReadFeatureCounts html
ReadGRAND html
ReadGRAND3 html
ReadNewTotal html
RotatateAxisLabels html
SaveNtrSlot html
Scale html
Semantics.concentration html
Semantics.time html
ServeGrandR html
SetParallel html
SimulateKinetics html
SimulateReadsForSample html
SimulateTimeCourse html
SimulateTimeCourseNonConstant html
Slots html
ToIndex html
Transform.no html
TransformSnapshot html
UpdateSymbols html
UseNtrSlot html
VulcanoPlot html
as.Seurat.grandR html
check.analysis html
correctdropout html
data.apply html
density2d html
dropout html
dropoutpercent html
estimate.dispersion html
f.nonconst html
f.nonconst.linear html
f.old.equi html
get.mode.slot html
grandR html
psapply html
structure2vector html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (grandR)