* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘gp3bayes’ ... ** this is package ‘gp3bayes’ version ‘0.5.0’ ** package ‘gp3bayes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘gp3bayes’ finding HTML links ... done advanced_pupil_trajectory_table html analysis_bundle_table html analysis_manifest_table html apply_transformation_recipe html as.data.frame.gp3bayes_pupil_contract html as.data.frame.gp3bayes_pupil_estimand html as_pupil_prediction_draws html assess_binary_prior_sensitivity html assess_duration_prior_sensitivity html assess_powerscaled_sensitivity html audit_advanced_pupil_identifiability html audit_backend_parity html audit_binocular_pupil_readiness html audit_design_support html audit_duration_boundaries html audit_duration_unit_invariance html audit_estimand_invariance html audit_fixed_effect_design html audit_missingness_structure html audit_model_readiness html audit_model_readiness_strict html audit_prediction_support html audit_pupil_computational_budget html audit_pupil_measurement_context html audit_pupil_measurement_model html audit_pupil_missingness html audit_pupil_predictive_calibration html audit_pupil_readiness html audit_pupil_temporal_dependence html audit_random_effects_support html backend_capabilities html backend_environment_table html backend_parity_table html bayesian_backend_capabilities html binary_calibration_error html binary_calibration_table html binary_calibration_uncertainty html binary_calibration_uncertainty_table html binary_confusion_table html binary_group_calibration html binary_precision_recall_curve html binary_prediction_scores html binary_roc_curve html binary_threshold_metrics html build_model_formula html capture_gp3bayes_schema html check_advanced_pupil_prior_predictive html check_binary_posterior_predictive html check_binary_ppc_details html check_binary_prior_predictive html check_cmdstan_backend html check_duration_posterior_predictive html check_duration_ppc_details html check_duration_prior_predictive html check_model_ppc html check_pupil_posterior_predictive html check_pupil_prior_predictive html collect_model_evidence html compare_analysis_manifests html compare_estimand_sensitivity html compare_gp3bayes_schemas html compare_psis_loo html compare_pupil_autocorrelation html compare_pupil_lfo html compare_pupil_models html compare_pupil_sensitivity_estimands html compute_kfold_cv html compute_loo_model_weights html compute_psis_loo html compute_psis_loo_from_log_lik html create_advanced_pupil_prior_specification html create_analysis_bundle html create_analysis_figure_set html create_analysis_manifest html create_binary_model_report html create_brms_sbc_plan html create_complete_evidence_inventory html create_contrast_coding_sensitivity_specification html create_custom_sbc_plan html create_diagnostic_dashboard html create_diagnostic_dashboard_figures html create_duration_model_report html create_duration_unit_sensitivity_specification html create_figure_set html create_group_deletion_sensitivity_plan html create_loo_influence_atlas html create_model_card html create_model_contract html create_model_evidence_report html create_model_specification html create_prediction_contrast_profile html create_prediction_grid html create_prediction_profile html create_prediction_surface html create_predictive_distribution_atlas html create_predictor_scaling_sensitivity_specification html create_prior_specification html create_publication_registry html create_publication_table_set html create_pupil_advanced_sensitivity_suite html create_pupil_arma_spec html create_pupil_contract html create_pupil_gp_spec html create_pupil_lfo_plan html create_pupil_measurement_model html create_pupil_missingness_spec html create_pupil_model_set html create_pupil_sensitivity_suite html create_pupil_validation_plan html create_random_slope_sensitivity_plan html create_reporting_checklist html create_sensitivity_suite_plan html create_transformation_recipe html design_support_table html detect_binary_separation html diagnose_advanced_pupil_fit html diagnose_binary_fit html diagnose_duration_fit html diagnose_model_fit html diagnose_pupil_fit html diagnostic_dashboard_table html duration_pit_table html duration_prediction_scores html duration_qq_table html duration_quantile_calibration html duration_tail_check html estimand_sensitivity_table html estimate_binocular_pupil_trajectory html estimate_model_estimands html estimate_pupil_auc html estimate_pupil_dynamic_contrast html estimate_pupil_peak html estimate_pupil_peak_latency html estimate_pupil_residual_scale html estimate_pupil_response_parameters html estimate_pupil_threshold_duration html estimate_pupil_trajectory html estimate_pupil_trajectory_derivative html estimate_pupil_window html estimate_standardized_duration_estimands html estimate_standardized_probability_contrast html evaluate_pathological_simulation html evidence_inventory_table html extract_expected_predictions html extract_linear_predictions html extract_log_likelihood html extract_posterior_draws html extract_posterior_predictions html extract_sampler_diagnostics html fit_advanced_pupil_model html fit_advanced_pupil_model_backend html fit_advanced_pupil_model_cmdstanr html fit_binary_model html fit_binary_model_backend html fit_binocular_pupil_model html fit_duration_model html fit_duration_model_backend html fit_pupil_model html fit_pupil_model_backend html fit_pupil_model_cmdstanr html fit_pupil_response_shape_model html freeze_analysis_manifest html freeze_gp3bayes_schema html gazepoint_pupil_mapping_table html gp3bayes-package html gp3bayes_specification_traceability html group_deletion_sensitivity_table html group_effect_draws_table html group_effect_rank_probability_table html group_effect_table html group_prediction_summary html grouped_prediction_check html identify_identifier_like_predictors html identify_loo_influential_observations html identify_mcmc_issues html inspect_gazepoint_pupil_schema html interaction_prior_summary html invert_transformation_recipe html loo_diagnostic_table html loo_flagged_data html loo_group_influence_table html loo_influence_atlas_table html loo_influence_summary html loo_pointwise_table html loo_summary_table html manifest_comparison_table html materialize_pupil_advanced_sensitivity_scenario html materialize_pupil_sensitivity_scenario html mcmc_diagnostic_table html missingness_audit_table html model_card_table html model_comparison_table html model_evidence_table html model_weights_table html model_workflow_status html plot.gp3bayes_kfold_cv html plot.gp3bayes_strict_readiness_audit html plot_advanced_pupil_simulation html plot_advanced_pupil_trajectory html plot_autocorrelation html plot_backend_environment_gg html plot_backend_parity_gg html plot_binary_calibration html plot_binary_calibration_uncertainty html plot_binary_group_calibration html plot_binary_precision_recall html plot_binary_roc html plot_binary_threshold_metrics html plot_binocular_pupil_trajectory html plot_design_support_gg html plot_diagnostic_dashboard html plot_duration_pit html plot_duration_qq html plot_duration_quantile_calibration html plot_duration_tail html plot_estimand_intervals html plot_estimand_sensitivity_gg html plot_exceedance_probability html plot_group_deletion_sensitivity html plot_group_effect_distribution html plot_group_effect_rank_probability html plot_group_effects html plot_group_predictions html plot_grouped_prediction_check html plot_loo_group_elpd html plot_loo_group_influence html plot_loo_influence html plot_loo_influence_rank html plot_loo_pareto_vs_elpd html plot_loo_pointwise_elpd html plot_manifest_comparison_gg html plot_mcmc_quality html plot_missingness_gg html plot_model_comparison html plot_model_evidence_gg html plot_model_weights html plot_posterior_areas html plot_posterior_correlations html plot_posterior_density html plot_posterior_intervals html plot_posterior_pairs html plot_powerscale_sensitivity_gg html plot_ppc_statistic html plot_prediction_contrast_profile html plot_prediction_draws html plot_prediction_gradient html plot_prediction_interval_width html plot_prediction_intervals html plot_prediction_profile html plot_prediction_rank_probabilities html plot_prediction_score_uncertainty html plot_prediction_support html plot_prediction_surface html plot_prediction_surface_uncertainty html plot_predictive_atlas_statistics html plot_predictive_coverage html plot_predictive_quantile_envelope html plot_predictive_residuals html plot_prior_posterior_contraction html plot_prior_posterior_density html plot_prior_posterior_intervals html plot_prior_posterior_shift html plot_prior_sensitivity html plot_prior_sensitivity_scenarios html plot_pupil_autocorrelation_comparison html plot_pupil_dynamic_contrast html plot_pupil_estimand html plot_pupil_gp_hyperparameters html plot_pupil_identifiability_audit html plot_pupil_lfo html plot_pupil_measurement_audit html plot_pupil_measurement_uncertainty html plot_pupil_missingness html plot_pupil_model_comparison html plot_pupil_model_complexity html plot_pupil_observed_trajectory html plot_pupil_posterior_trajectory html plot_pupil_ppc html plot_pupil_predictive_calibration html plot_pupil_readiness html plot_pupil_residual_acf html plot_pupil_residual_scale html plot_pupil_residual_spectrum html plot_pupil_response_parameters html plot_pupil_sensitivity html plot_pupil_temporal_dependence html plot_pupil_trajectory_derivative html plot_pupil_validation html plot_random_intercept_variance_partition html plot_random_slope_sensitivity html plot_rank_diagnostics html plot_recovery_bias html plot_recovery_coverage html plot_recovery_estimates html plot_recovery_fit_status html plot_recovery_rmse html plot_reporting_checklist html plot_sampler_diagnostics html plot_sampling_diagnostics html plot_sbc_coverage_gg html plot_sbc_ecdf_gg html plot_sbc_rank_gg html plot_sbc_simulated_vs_estimated_gg html plot_schema_comparison_gg html plot_sensitivity_suite_gg html plot_uncertainty_decomposition html plot_variance_components html posterior_correlation_table html posterior_interval_table html posterior_predictive_statistic html posterior_predictive_summary_table html posterior_probability_table html powerscale_sensitivity_table html powerscale_sequence_for_fit html ppc_statistic_table html predict_advanced_pupil_trajectory html predict_binary_probability html predict_duration html predict_model html predict_pupil_trajectory html prediction_contrast html prediction_contrast_profile_table html prediction_draws_long html prediction_exceedance_probability html prediction_gradient_table html prediction_interval_width html prediction_pairwise_contrasts html prediction_profile_table html prediction_rank_probabilities html prediction_score_uncertainty html prediction_score_uncertainty_table html prediction_support_table html prediction_surface_table html prediction_table html prediction_uncertainty_decomposition html predictive_coverage_table html predictive_distribution_atlas_table html predictive_quantile_envelope html predictive_residuals html preflight_model_specification html prepare_binocular_pupil_timecourse html prepare_hierarchical_binary_data html prepare_hierarchical_duration_data html prepare_pupil_timecourse html print.gp3bayes_model_contract html print.gp3bayes_model_specification html print.gp3bayes_prior_specification html print.gp3bayes_readiness_audit html prior_posterior_bridge html prior_posterior_distance_table html prior_posterior_draws_long html prior_posterior_summary_table html prior_sensitivity_scenario_table html prior_sensitivity_table html prior_specification_table html publication_registry_table html pupil_advanced_capabilities html pupil_advanced_compatibility_table html pupil_advanced_mapping_table html pupil_advanced_specification_table html pupil_autocorrelation_table html pupil_binocular_agreement_table html pupil_binocular_correlation html pupil_binocular_difference html pupil_condition_contrast html pupil_distribution_table html pupil_dynamic_contrast_table html pupil_gp_hyperparameters html pupil_gp_table html pupil_identifiability_table html pupil_measurement_audit_table html pupil_measurement_uncertainty_table html pupil_missingness_table html pupil_model_card html pupil_model_card_table html pupil_model_comparison_table html pupil_model_weights html pupil_ppc_table html pupil_readiness_table html pupil_residual_acf html pupil_residual_scale_table html pupil_residual_spectrum html pupil_response_parameter_table html pupil_sensitivity_table html pupil_specification_table html pupil_trajectory_derivative_table html pupil_trajectory_table html pupil_validation_table html random_intercept_variance_partition html random_intercept_variance_partition_table html random_slope_sensitivity_table html read_analysis_manifest html read_gp3bayes_schema html recovery_estimate_table html recovery_fit_status_table html recovery_parameter_table html register_publication_figure html register_publication_table html review_duration_extremes html run_binary_recovery html run_duration_recovery html run_group_deletion_sensitivity html run_random_slope_sensitivity html run_sbc_plan html run_sensitivity_suite html sampler_diagnostic_table html save_figure_set html save_publication_registry_figures html sbc_overview_table html sbc_stats_table html schema_comparison_table html score_pupil_predictions html sensitivity_suite_table html simulate_advanced_pupil_timecourse html simulate_binary_pathology html simulate_binocular_pupil_timecourse html simulate_declared_prior_draws html simulate_duration_pathology html simulate_hierarchical_binary_data html simulate_hierarchical_duration_data html simulate_pupil_response_shape html simulate_pupil_timecourse html specify_advanced_pupil_timecourse_model html specify_binary_model html specify_binary_model_with_interaction_prior html specify_binocular_pupil_model html specify_duration_model html specify_duration_model_with_interaction_prior html specify_pupil_distribution html specify_pupil_response_shape_model html specify_pupil_timecourse_model html summarise_binary_group_variation html summarise_binary_posterior html summarise_condition_balance html summarise_duration_posterior html summarise_estimand_draws html summarise_mcmc_quality html summarise_model_posterior html summarise_pupil_posterior html summarise_sbc_result html summarise_sensitivity_suite html theme_gp3bayes html translate_advanced_pupil_model_to_brms html translate_binary_model_to_brms html translate_binary_model_with_interaction_prior html translate_binocular_pupil_model_to_brms html translate_duration_model_to_brms html translate_duration_model_with_interaction_prior html translate_pupil_model_to_brms html translate_pupil_response_shape_to_brms html validate_analysis_manifest html validate_backend_environment html validate_gp3bayes_object html validate_gp3bayes_schema html validate_prior_specification html validate_publication_registry html validate_pupil_leave_future_out html validate_pupil_model html validate_transformation_replay html variance_component_table html write_analysis_bundle_report html write_diagnostic_dashboard_report html write_model_card html write_publication_registry html write_reproducibility_report html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gp3bayes)