* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘gp3bayes’ ...
** this is package ‘gp3bayes’ version ‘0.5.0’
** package ‘gp3bayes’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘gp3bayes’
finding HTML links ... done
advanced_pupil_trajectory_table html
analysis_bundle_table html
analysis_manifest_table html
apply_transformation_recipe html
as.data.frame.gp3bayes_pupil_contract html
as.data.frame.gp3bayes_pupil_estimand html
as_pupil_prediction_draws html
assess_binary_prior_sensitivity html
assess_duration_prior_sensitivity html
assess_powerscaled_sensitivity html
audit_advanced_pupil_identifiability html
audit_backend_parity html
audit_binocular_pupil_readiness html
audit_design_support html
audit_duration_boundaries html
audit_duration_unit_invariance html
audit_estimand_invariance html
audit_fixed_effect_design html
audit_missingness_structure html
audit_model_readiness html
audit_model_readiness_strict html
audit_prediction_support html
audit_pupil_computational_budget html
audit_pupil_measurement_context html
audit_pupil_measurement_model html
audit_pupil_missingness html
audit_pupil_predictive_calibration html
audit_pupil_readiness html
audit_pupil_temporal_dependence html
audit_random_effects_support html
backend_capabilities html
backend_environment_table html
backend_parity_table html
bayesian_backend_capabilities html
binary_calibration_error html
binary_calibration_table html
binary_calibration_uncertainty html
binary_calibration_uncertainty_table html
binary_confusion_table html
binary_group_calibration html
binary_precision_recall_curve html
binary_prediction_scores html
binary_roc_curve html
binary_threshold_metrics html
build_model_formula html
capture_gp3bayes_schema html
check_advanced_pupil_prior_predictive html
check_binary_posterior_predictive html
check_binary_ppc_details html
check_binary_prior_predictive html
check_cmdstan_backend html
check_duration_posterior_predictive html
check_duration_ppc_details html
check_duration_prior_predictive html
check_model_ppc html
check_pupil_posterior_predictive html
check_pupil_prior_predictive html
collect_model_evidence html
compare_analysis_manifests html
compare_estimand_sensitivity html
compare_gp3bayes_schemas html
compare_psis_loo html
compare_pupil_autocorrelation html
compare_pupil_lfo html
compare_pupil_models html
compare_pupil_sensitivity_estimands html
compute_kfold_cv html
compute_loo_model_weights html
compute_psis_loo html
compute_psis_loo_from_log_lik html
create_advanced_pupil_prior_specification
html
create_analysis_bundle html
create_analysis_figure_set html
create_analysis_manifest html
create_binary_model_report html
create_brms_sbc_plan html
create_complete_evidence_inventory html
create_contrast_coding_sensitivity_specification
html
create_custom_sbc_plan html
create_diagnostic_dashboard html
create_diagnostic_dashboard_figures html
create_duration_model_report html
create_duration_unit_sensitivity_specification
html
create_figure_set html
create_group_deletion_sensitivity_plan
html
create_loo_influence_atlas html
create_model_card html
create_model_contract html
create_model_evidence_report html
create_model_specification html
create_prediction_contrast_profile html
create_prediction_grid html
create_prediction_profile html
create_prediction_surface html
create_predictive_distribution_atlas html
create_predictor_scaling_sensitivity_specification
html
create_prior_specification html
create_publication_registry html
create_publication_table_set html
create_pupil_advanced_sensitivity_suite
html
create_pupil_arma_spec html
create_pupil_contract html
create_pupil_gp_spec html
create_pupil_lfo_plan html
create_pupil_measurement_model html
create_pupil_missingness_spec html
create_pupil_model_set html
create_pupil_sensitivity_suite html
create_pupil_validation_plan html
create_random_slope_sensitivity_plan html
create_reporting_checklist html
create_sensitivity_suite_plan html
create_transformation_recipe html
design_support_table html
detect_binary_separation html
diagnose_advanced_pupil_fit html
diagnose_binary_fit html
diagnose_duration_fit html
diagnose_model_fit html
diagnose_pupil_fit html
diagnostic_dashboard_table html
duration_pit_table html
duration_prediction_scores html
duration_qq_table html
duration_quantile_calibration html
duration_tail_check html
estimand_sensitivity_table html
estimate_binocular_pupil_trajectory html
estimate_model_estimands html
estimate_pupil_auc html
estimate_pupil_dynamic_contrast html
estimate_pupil_peak html
estimate_pupil_peak_latency html
estimate_pupil_residual_scale html
estimate_pupil_response_parameters html
estimate_pupil_threshold_duration html
estimate_pupil_trajectory html
estimate_pupil_trajectory_derivative html
estimate_pupil_window html
estimate_standardized_duration_estimands
html
estimate_standardized_probability_contrast
html
evaluate_pathological_simulation html
evidence_inventory_table html
extract_expected_predictions html
extract_linear_predictions html
extract_log_likelihood html
extract_posterior_draws html
extract_posterior_predictions html
extract_sampler_diagnostics html
fit_advanced_pupil_model html
fit_advanced_pupil_model_backend html
fit_advanced_pupil_model_cmdstanr html
fit_binary_model html
fit_binary_model_backend html
fit_binocular_pupil_model html
fit_duration_model html
fit_duration_model_backend html
fit_pupil_model html
fit_pupil_model_backend html
fit_pupil_model_cmdstanr html
fit_pupil_response_shape_model html
freeze_analysis_manifest html
freeze_gp3bayes_schema html
gazepoint_pupil_mapping_table html
gp3bayes-package html
gp3bayes_specification_traceability html
group_deletion_sensitivity_table html
group_effect_draws_table html
group_effect_rank_probability_table html
group_effect_table html
group_prediction_summary html
grouped_prediction_check html
identify_identifier_like_predictors html
identify_loo_influential_observations html
identify_mcmc_issues html
inspect_gazepoint_pupil_schema html
interaction_prior_summary html
invert_transformation_recipe html
loo_diagnostic_table html
loo_flagged_data html
loo_group_influence_table html
loo_influence_atlas_table html
loo_influence_summary html
loo_pointwise_table html
loo_summary_table html
manifest_comparison_table html
materialize_pupil_advanced_sensitivity_scenario
html
materialize_pupil_sensitivity_scenario
html
mcmc_diagnostic_table html
missingness_audit_table html
model_card_table html
model_comparison_table html
model_evidence_table html
model_weights_table html
model_workflow_status html
plot.gp3bayes_kfold_cv html
plot.gp3bayes_strict_readiness_audit html
plot_advanced_pupil_simulation html
plot_advanced_pupil_trajectory html
plot_autocorrelation html
plot_backend_environment_gg html
plot_backend_parity_gg html
plot_binary_calibration html
plot_binary_calibration_uncertainty html
plot_binary_group_calibration html
plot_binary_precision_recall html
plot_binary_roc html
plot_binary_threshold_metrics html
plot_binocular_pupil_trajectory html
plot_design_support_gg html
plot_diagnostic_dashboard html
plot_duration_pit html
plot_duration_qq html
plot_duration_quantile_calibration html
plot_duration_tail html
plot_estimand_intervals html
plot_estimand_sensitivity_gg html
plot_exceedance_probability html
plot_group_deletion_sensitivity html
plot_group_effect_distribution html
plot_group_effect_rank_probability html
plot_group_effects html
plot_group_predictions html
plot_grouped_prediction_check html
plot_loo_group_elpd html
plot_loo_group_influence html
plot_loo_influence html
plot_loo_influence_rank html
plot_loo_pareto_vs_elpd html
plot_loo_pointwise_elpd html
plot_manifest_comparison_gg html
plot_mcmc_quality html
plot_missingness_gg html
plot_model_comparison html
plot_model_evidence_gg html
plot_model_weights html
plot_posterior_areas html
plot_posterior_correlations html
plot_posterior_density html
plot_posterior_intervals html
plot_posterior_pairs html
plot_powerscale_sensitivity_gg html
plot_ppc_statistic html
plot_prediction_contrast_profile html
plot_prediction_draws html
plot_prediction_gradient html
plot_prediction_interval_width html
plot_prediction_intervals html
plot_prediction_profile html
plot_prediction_rank_probabilities html
plot_prediction_score_uncertainty html
plot_prediction_support html
plot_prediction_surface html
plot_prediction_surface_uncertainty html
plot_predictive_atlas_statistics html
plot_predictive_coverage html
plot_predictive_quantile_envelope html
plot_predictive_residuals html
plot_prior_posterior_contraction html
plot_prior_posterior_density html
plot_prior_posterior_intervals html
plot_prior_posterior_shift html
plot_prior_sensitivity html
plot_prior_sensitivity_scenarios html
plot_pupil_autocorrelation_comparison html
plot_pupil_dynamic_contrast html
plot_pupil_estimand html
plot_pupil_gp_hyperparameters html
plot_pupil_identifiability_audit html
plot_pupil_lfo html
plot_pupil_measurement_audit html
plot_pupil_measurement_uncertainty html
plot_pupil_missingness html
plot_pupil_model_comparison html
plot_pupil_model_complexity html
plot_pupil_observed_trajectory html
plot_pupil_posterior_trajectory html
plot_pupil_ppc html
plot_pupil_predictive_calibration html
plot_pupil_readiness html
plot_pupil_residual_acf html
plot_pupil_residual_scale html
plot_pupil_residual_spectrum html
plot_pupil_response_parameters html
plot_pupil_sensitivity html
plot_pupil_temporal_dependence html
plot_pupil_trajectory_derivative html
plot_pupil_validation html
plot_random_intercept_variance_partition
html
plot_random_slope_sensitivity html
plot_rank_diagnostics html
plot_recovery_bias html
plot_recovery_coverage html
plot_recovery_estimates html
plot_recovery_fit_status html
plot_recovery_rmse html
plot_reporting_checklist html
plot_sampler_diagnostics html
plot_sampling_diagnostics html
plot_sbc_coverage_gg html
plot_sbc_ecdf_gg html
plot_sbc_rank_gg html
plot_sbc_simulated_vs_estimated_gg html
plot_schema_comparison_gg html
plot_sensitivity_suite_gg html
plot_uncertainty_decomposition html
plot_variance_components html
posterior_correlation_table html
posterior_interval_table html
posterior_predictive_statistic html
posterior_predictive_summary_table html
posterior_probability_table html
powerscale_sensitivity_table html
powerscale_sequence_for_fit html
ppc_statistic_table html
predict_advanced_pupil_trajectory html
predict_binary_probability html
predict_duration html
predict_model html
predict_pupil_trajectory html
prediction_contrast html
prediction_contrast_profile_table html
prediction_draws_long html
prediction_exceedance_probability html
prediction_gradient_table html
prediction_interval_width html
prediction_pairwise_contrasts html
prediction_profile_table html
prediction_rank_probabilities html
prediction_score_uncertainty html
prediction_score_uncertainty_table html
prediction_support_table html
prediction_surface_table html
prediction_table html
prediction_uncertainty_decomposition html
predictive_coverage_table html
predictive_distribution_atlas_table html
predictive_quantile_envelope html
predictive_residuals html
preflight_model_specification html
prepare_binocular_pupil_timecourse html
prepare_hierarchical_binary_data html
prepare_hierarchical_duration_data html
prepare_pupil_timecourse html
print.gp3bayes_model_contract html
print.gp3bayes_model_specification html
print.gp3bayes_prior_specification html
print.gp3bayes_readiness_audit html
prior_posterior_bridge html
prior_posterior_distance_table html
prior_posterior_draws_long html
prior_posterior_summary_table html
prior_sensitivity_scenario_table html
prior_sensitivity_table html
prior_specification_table html
publication_registry_table html
pupil_advanced_capabilities html
pupil_advanced_compatibility_table html
pupil_advanced_mapping_table html
pupil_advanced_specification_table html
pupil_autocorrelation_table html
pupil_binocular_agreement_table html
pupil_binocular_correlation html
pupil_binocular_difference html
pupil_condition_contrast html
pupil_distribution_table html
pupil_dynamic_contrast_table html
pupil_gp_hyperparameters html
pupil_gp_table html
pupil_identifiability_table html
pupil_measurement_audit_table html
pupil_measurement_uncertainty_table html
pupil_missingness_table html
pupil_model_card html
pupil_model_card_table html
pupil_model_comparison_table html
pupil_model_weights html
pupil_ppc_table html
pupil_readiness_table html
pupil_residual_acf html
pupil_residual_scale_table html
pupil_residual_spectrum html
pupil_response_parameter_table html
pupil_sensitivity_table html
pupil_specification_table html
pupil_trajectory_derivative_table html
pupil_trajectory_table html
pupil_validation_table html
random_intercept_variance_partition html
random_intercept_variance_partition_table
html
random_slope_sensitivity_table html
read_analysis_manifest html
read_gp3bayes_schema html
recovery_estimate_table html
recovery_fit_status_table html
recovery_parameter_table html
register_publication_figure html
register_publication_table html
review_duration_extremes html
run_binary_recovery html
run_duration_recovery html
run_group_deletion_sensitivity html
run_random_slope_sensitivity html
run_sbc_plan html
run_sensitivity_suite html
sampler_diagnostic_table html
save_figure_set html
save_publication_registry_figures html
sbc_overview_table html
sbc_stats_table html
schema_comparison_table html
score_pupil_predictions html
sensitivity_suite_table html
simulate_advanced_pupil_timecourse html
simulate_binary_pathology html
simulate_binocular_pupil_timecourse html
simulate_declared_prior_draws html
simulate_duration_pathology html
simulate_hierarchical_binary_data html
simulate_hierarchical_duration_data html
simulate_pupil_response_shape html
simulate_pupil_timecourse html
specify_advanced_pupil_timecourse_model
html
specify_binary_model html
specify_binary_model_with_interaction_prior
html
specify_binocular_pupil_model html
specify_duration_model html
specify_duration_model_with_interaction_prior
html
specify_pupil_distribution html
specify_pupil_response_shape_model html
specify_pupil_timecourse_model html
summarise_binary_group_variation html
summarise_binary_posterior html
summarise_condition_balance html
summarise_duration_posterior html
summarise_estimand_draws html
summarise_mcmc_quality html
summarise_model_posterior html
summarise_pupil_posterior html
summarise_sbc_result html
summarise_sensitivity_suite html
theme_gp3bayes html
translate_advanced_pupil_model_to_brms
html
translate_binary_model_to_brms html
translate_binary_model_with_interaction_prior
html
translate_binocular_pupil_model_to_brms
html
translate_duration_model_to_brms html
translate_duration_model_with_interaction_prior
html
translate_pupil_model_to_brms html
translate_pupil_response_shape_to_brms
html
validate_analysis_manifest html
validate_backend_environment html
validate_gp3bayes_object html
validate_gp3bayes_schema html
validate_prior_specification html
validate_publication_registry html
validate_pupil_leave_future_out html
validate_pupil_model html
validate_transformation_replay html
variance_component_table html
write_analysis_bundle_report html
write_diagnostic_dashboard_report html
write_model_card html
write_publication_registry html
write_reproducibility_report html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gp3bayes)