* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘goat’ ...
** package ‘goat’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpfe4Q4P/R.INSTALL2f1b05c91e802/goat/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_gene_to_geneset_scores.cpp -o rcpp_gene_to_geneset_scores.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_null_distributions.cpp -o rcpp_null_distributions.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o goat.so RcppExports.o rcpp_gene_to_geneset_scores.o rcpp_null_distributions.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpfe4Q4P/R.INSTALL2f1b05c91e802/goat/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpfe4Q4P/R.INSTALL2f1b05c91e802/goat/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpfe4Q4P/R.INSTALL2f1b05c91e802/goat/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-goat/00new/goat/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘goat’
finding HTML links ... done
cluster_genesets html
darken_color html
download_genesets_goatrepo html
download_goat_manuscript_data html
filter_genesets html
gg_color_hue html
go_gene2go html
go_obo html
goat html
goat_logo html
goat_nulldistributions html
goat_print_version html
goat_version html
hgnc_idmap_table html
lighten_color html
load_genesets_gmtfile html
load_genesets_go_bioconductor html
load_genesets_go_fromfile html
load_genesets_syngo html
minlog10_fixzero html
padjust_genesets html
partition_genes html
plot_heatmap html
plot_lollipop html
plot_network html
plot_volcano html
rankscore html
rankscore_fixed_order html
reduce_genesets html
save_genesets html
score_geneset_directionality html
score_geneset_oddsratio html
string_trunc_right html
symbol_to_entrez html
test_genesets html
test_genesets_fisherexact html
test_genesets_goat_bootstrap html
test_genesets_goat_fitfunction html
test_genesets_goat_precomputed html
test_genesets_gsea html
test_genesets_hypergeometric html
treemap_data html
treemap_plot html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (goat)