* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘glyrepr’ ...
** this is package ‘glyrepr’ version ‘1.1.0’
** package ‘glyrepr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++-16 (Debian 16.2.0-1) 16.2.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNee62h/R.INSTALL3784a95ff55324/glyrepr/src'
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c compact-arrays.cpp -o compact-arrays.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c compact-iupac.cpp -o compact-iupac.o
g++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o glyrepr.so RcppExports.o compact-arrays.o compact-iupac.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNee62h/R.INSTALL3784a95ff55324/glyrepr/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNee62h/R.INSTALL3784a95ff55324/glyrepr/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNee62h/R.INSTALL3784a95ff55324/glyrepr/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-glyrepr/00new/glyrepr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘glyrepr’
finding HTML links ... done
add_colors html
add_gray_linkages html
as_glycan_composition html
as_glycan_structure html
available_monosaccharides html
available_substituents html
canonicalize_glycan_graph html
canonicalize_glycan_graphs html
colorize_iupac_string html
convert_to_generic html
count_mono html
dot-extract_base_mono html
dot-parse_iupac_condensed_single html
enumerate_floating_graph_localizations
html
enumerate_floating_localizations html
fill_anomer_pos html
format_glycan_structure_subset html
get_alditol html
get_anomer html
get_mono_color html
get_mono_type html
get_structure_graphs html
get_structure_level html
glycan_composition html
glycan_structure html
glyrepr-package html
glyrepr-vctrs html
graph_to_iupac html
has_floating_parts html
has_floating_substituents html
has_linkages html
infer_anomer_pos html
is_known_monosaccharide html
localize_floating_parts html
n_glycan_core html
new_glycan_structure html
possible_linkages html
remove_linkages html
remove_substituents html
replace_monos_with_colored html
simap html
smap html
smap2 html
smap_predicates html
smap_unique html
spmap html
structure_candidate_edges html
structure_component_membership html
structure_floating_candidates html
structure_from_arrays html
structure_tables html
structure_to_iupac html
valid_linkages html
validate_glycan_graph html
validate_glycan_graph_vector html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (glyrepr)