* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘glmmsel’ ...
** this is package ‘glmmsel’ version ‘1.0.2’
** package ‘glmmsel’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZ65IV6/R.INSTALL28505d652f2349/glmmsel/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c auxiliary.cpp -o auxiliary.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c cd.cpp -o cd.o
In file included from /usr/include/c++/14/cmath:49,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/platform/compiler.h:100,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/r/headers.h:66,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:30,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
from cd.cpp:1:
In function ‘constexpr double std::abs(double)’,
inlined from ‘void cd::update_intercept(fit&, const data&)’ at cd.cpp:133:43:
/usr/include/c++/14/bits/std_abs.h:72:30: warning: ‘delta_beta0’ may be used uninitialized [-Wmaybe-uninitialized]
72 | { return __builtin_fabs(__x); }
| ^
cd.cpp: In member function ‘void cd::update_intercept(fit&, const data&)’:
cd.cpp:92:10: note: ‘delta_beta0’ was declared here
92 | double delta_beta0;
| ^~~~~~~~~~~
In function ‘constexpr double std::abs(double)’,
inlined from ‘void cd::update_intercept(fit&, const data&)’ at cd.cpp:133:66:
/usr/include/c++/14/bits/std_abs.h:72:30: warning: ‘delta_gamma0’ may be used uninitialized [-Wmaybe-uninitialized]
72 | { return __builtin_fabs(__x); }
| ^
cd.cpp: In member function ‘void cd::update_intercept(fit&, const data&)’:
cd.cpp:93:10: note: ‘delta_gamma0’ was declared here
93 | double delta_gamma0;
| ^~~~~~~~~~~~
cd.cpp: In member function ‘void cd::compute_lambda(const fit&, data&, const arma::mat&, const arma::uvec&)’:
cd.cpp:28:12: warning: ‘lambda_k’ may be used uninitialized [-Wmaybe-uninitialized]
28 | double lambda_k;
| ^~~~~~~~
In function ‘constexpr double std::abs(double)’,
inlined from ‘void cd::update_slope(fit&, const data&, const arma::uword&)’ at cd.cpp:206:43:
/usr/include/c++/14/bits/std_abs.h:72:30: warning: ‘delta_beta’ may be used uninitialized [-Wmaybe-uninitialized]
72 | { return __builtin_fabs(__x); }
| ^
cd.cpp: In member function ‘void cd::update_slope(fit&, const data&, const arma::uword&)’:
cd.cpp:151:10: note: ‘delta_beta’ was declared here
151 | double delta_beta;
| ^~~~~~~~~~
In function ‘constexpr double std::abs(double)’,
inlined from ‘void cd::update_slope(fit&, const data&, const arma::uword&)’ at cd.cpp:206:65:
/usr/include/c++/14/bits/std_abs.h:72:30: warning: ‘delta_gamma’ may be used uninitialized [-Wmaybe-uninitialized]
72 | { return __builtin_fabs(__x); }
| ^
cd.cpp: In member function ‘void cd::update_slope(fit&, const data&, const arma::uword&)’:
cd.cpp:152:10: note: ‘delta_gamma’ was declared here
152 | double delta_gamma;
| ^~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c fitpath.cpp -o fitpath.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c ls.cpp -o ls.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c path.cpp -o path.o
path.cpp: In member function ‘void path::run(cd&, ls&, pql&)’:
path.cpp:50:39: warning: comparison of integer expressions of different signedness: ‘arma::enable_if2<true, unsigned int>::result’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
49 | if (compute_lambda && (data.intercept + data.random_intercept + arma::sum(fit.beta != 0) +
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
50 | arma::sum(fit.gamma != 0) + 1 >= data.n)) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
path.cpp:92:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
92 | if (compute_lambda && (nnz_i == data.p)) {
| ~~~~~~^~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c pql.cpp -o pql.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o glmmsel.so RcppExports.o auxiliary.o cd.o fitpath.o ls.o path.o pql.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZ65IV6/R.INSTALL28505d652f2349/glmmsel/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZ65IV6/R.INSTALL28505d652f2349/glmmsel/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZ65IV6/R.INSTALL28505d652f2349/glmmsel/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-glmmsel/00new/glmmsel/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘glmmsel’
finding HTML links ... done
coef.cv.glmmsel html
coef.glmmsel html
cv.glmmsel html
fixef html
fixef.cv.glmmsel html
fixef.glmmsel html
glmmsel html
plot.cv.glmmsel html
plot.glmmsel html
predict.cv.glmmsel html
predict.glmmsel html
ranef html
ranef.cv.glmmsel html
ranef.glmmsel html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (glmmsel)