* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘glmSTARMA’ ... ** this is package ‘glmSTARMA’ version ‘1.0.0’ ** package ‘glmSTARMA’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.3.0-12) 14.3.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUf77tF/R.INSTALL85840384d847c/glmSTARMA/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from glmstarma.h:26, from glmSTARMA_types.h:1, from RcppExports.cpp:4: covariates.h: In member function ‘virtual arma::vec SpatialConstantCovariate::get_values_at(int)’: covariates.h:87:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 87 | if(t - burn_in >= values.n_elem){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: In member function ‘virtual arma::vec DefaultCovariate::get_values_at(int)’: covariates.h:119:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 119 | if(t - burn_in >= values.n_cols){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: At global scope: covariates.h:148:18: warning: class ‘CovariateList’ is implicitly friends with itself 148 | friend class CovariateList; | ^~~~~~~~~~~~~ In file included from glmstarma.h:28: design.h: In constructor ‘Design::Design(const arma::mat&, const CovariateList*, const arma::mat&, const Orders*, const Family*, Neighborhood*, Neighborhood*, Neighborhood*)’: design.h:45:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 45 | for(int i = 0; i < orders->n_obs_effective; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c covariates.cpp -o covariates.o In file included from glmstarma.h:26, from covariates.cpp:13: covariates.h: In member function ‘virtual arma::vec SpatialConstantCovariate::get_values_at(int)’: covariates.h:87:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 87 | if(t - burn_in >= values.n_elem){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: In member function ‘virtual arma::vec DefaultCovariate::get_values_at(int)’: covariates.h:119:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 119 | if(t - burn_in >= values.n_cols){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: At global scope: covariates.h:148:18: warning: class ‘CovariateList’ is implicitly friends with itself 148 | friend class CovariateList; | ^~~~~~~~~~~~~ In file included from glmstarma.h:28: design.h: In constructor ‘Design::Design(const arma::mat&, const CovariateList*, const arma::mat&, const Orders*, const Family*, Neighborhood*, Neighborhood*, Neighborhood*)’: design.h:45:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 45 | for(int i = 0; i < orders->n_obs_effective; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dglmstarma.cpp -o dglmstarma.o In file included from glmstarma.h:26, from dglmstarma.cpp:10: covariates.h: In member function ‘virtual arma::vec SpatialConstantCovariate::get_values_at(int)’: covariates.h:87:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 87 | if(t - burn_in >= values.n_elem){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: In member function ‘virtual arma::vec DefaultCovariate::get_values_at(int)’: covariates.h:119:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 119 | if(t - burn_in >= values.n_cols){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: At global scope: covariates.h:148:18: warning: class ‘CovariateList’ is implicitly friends with itself 148 | friend class CovariateList; | ^~~~~~~~~~~~~ In file included from glmstarma.h:28: design.h: In constructor ‘Design::Design(const arma::mat&, const CovariateList*, const arma::mat&, const Orders*, const Family*, Neighborhood*, Neighborhood*, Neighborhood*)’: design.h:45:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 45 | for(int i = 0; i < orders->n_obs_effective; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c family.cpp -o family.o In file included from glmstarma.h:26, from family.cpp:12: covariates.h: In member function ‘virtual arma::vec SpatialConstantCovariate::get_values_at(int)’: covariates.h:87:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 87 | if(t - burn_in >= values.n_elem){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: In member function ‘virtual arma::vec DefaultCovariate::get_values_at(int)’: covariates.h:119:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 119 | if(t - burn_in >= values.n_cols){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: At global scope: covariates.h:148:18: warning: class ‘CovariateList’ is implicitly friends with itself 148 | friend class CovariateList; | ^~~~~~~~~~~~~ In file included from glmstarma.h:28: design.h: In constructor ‘Design::Design(const arma::mat&, const CovariateList*, const arma::mat&, const Orders*, const Family*, Neighborhood*, Neighborhood*, Neighborhood*)’: design.h:45:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 45 | for(int i = 0; i < orders->n_obs_effective; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c family_binomial.cpp -o family_binomial.o In file included from glmstarma.h:26, from family_binomial.cpp:10: covariates.h: In member function ‘virtual arma::vec SpatialConstantCovariate::get_values_at(int)’: covariates.h:87:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 87 | if(t - burn_in >= values.n_elem){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: In member function ‘virtual arma::vec DefaultCovariate::get_values_at(int)’: covariates.h:119:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 119 | if(t - burn_in >= values.n_cols){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: At global scope: covariates.h:148:18: warning: class ‘CovariateList’ is implicitly friends with itself 148 | friend class CovariateList; | ^~~~~~~~~~~~~ In file included from glmstarma.h:28: design.h: In constructor ‘Design::Design(const arma::mat&, const CovariateList*, const arma::mat&, const Orders*, const Family*, Neighborhood*, Neighborhood*, Neighborhood*)’: design.h:45:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 45 | for(int i = 0; i < orders->n_obs_effective; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c family_gamma.cpp -o family_gamma.o In file included from glmstarma.h:26, from family_gamma.cpp:10: covariates.h: In member function ‘virtual arma::vec SpatialConstantCovariate::get_values_at(int)’: covariates.h:87:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 87 | if(t - burn_in >= values.n_elem){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: In member function ‘virtual arma::vec DefaultCovariate::get_values_at(int)’: covariates.h:119:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 119 | if(t - burn_in >= values.n_cols){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: At global scope: covariates.h:148:18: warning: class ‘CovariateList’ is implicitly friends with itself 148 | friend class CovariateList; | ^~~~~~~~~~~~~ In file included from glmstarma.h:28: design.h: In constructor ‘Design::Design(const arma::mat&, const CovariateList*, const arma::mat&, const Orders*, const Family*, Neighborhood*, Neighborhood*, Neighborhood*)’: design.h:45:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 45 | for(int i = 0; i < orders->n_obs_effective; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c family_inverse_gauss.cpp -o family_inverse_gauss.o In file included from glmstarma.h:26, from family_inverse_gauss.cpp:10: covariates.h: In member function ‘virtual arma::vec SpatialConstantCovariate::get_values_at(int)’: covariates.h:87:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 87 | if(t - burn_in >= values.n_elem){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: In member function ‘virtual arma::vec DefaultCovariate::get_values_at(int)’: covariates.h:119:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 119 | if(t - burn_in >= values.n_cols){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: At global scope: covariates.h:148:18: warning: class ‘CovariateList’ is implicitly friends with itself 148 | friend class CovariateList; | ^~~~~~~~~~~~~ In file included from glmstarma.h:28: design.h: In constructor ‘Design::Design(const arma::mat&, const CovariateList*, const arma::mat&, const Orders*, const Family*, Neighborhood*, Neighborhood*, Neighborhood*)’: design.h:45:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 45 | for(int i = 0; i < orders->n_obs_effective; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c family_negative_binomial.cpp -o family_negative_binomial.o In file included from glmstarma.h:26, from family_negative_binomial.cpp:10: covariates.h: In member function ‘virtual arma::vec SpatialConstantCovariate::get_values_at(int)’: covariates.h:87:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 87 | if(t - burn_in >= values.n_elem){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: In member function ‘virtual arma::vec DefaultCovariate::get_values_at(int)’: covariates.h:119:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 119 | if(t - burn_in >= values.n_cols){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: At global scope: covariates.h:148:18: warning: class ‘CovariateList’ is implicitly friends with itself 148 | friend class CovariateList; | ^~~~~~~~~~~~~ In file included from glmstarma.h:28: design.h: In constructor ‘Design::Design(const arma::mat&, const CovariateList*, const arma::mat&, const Orders*, const Family*, Neighborhood*, Neighborhood*, Neighborhood*)’: design.h:45:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 45 | for(int i = 0; i < orders->n_obs_effective; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c family_normal.cpp -o family_normal.o In file included from glmstarma.h:26, from family_normal.cpp:10: covariates.h: In member function ‘virtual arma::vec SpatialConstantCovariate::get_values_at(int)’: covariates.h:87:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 87 | if(t - burn_in >= values.n_elem){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: In member function ‘virtual arma::vec DefaultCovariate::get_values_at(int)’: covariates.h:119:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 119 | if(t - burn_in >= values.n_cols){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: At global scope: covariates.h:148:18: warning: class ‘CovariateList’ is implicitly friends with itself 148 | friend class CovariateList; | ^~~~~~~~~~~~~ In file included from glmstarma.h:28: design.h: In constructor ‘Design::Design(const arma::mat&, const CovariateList*, const arma::mat&, const Orders*, const Family*, Neighborhood*, Neighborhood*, Neighborhood*)’: design.h:45:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 45 | for(int i = 0; i < orders->n_obs_effective; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c family_poisson.cpp -o family_poisson.o In file included from glmstarma.h:26, from family_poisson.cpp:10: covariates.h: In member function ‘virtual arma::vec SpatialConstantCovariate::get_values_at(int)’: covariates.h:87:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 87 | if(t - burn_in >= values.n_elem){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: In member function ‘virtual arma::vec DefaultCovariate::get_values_at(int)’: covariates.h:119:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 119 | if(t - burn_in >= values.n_cols){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: At global scope: covariates.h:148:18: warning: class ‘CovariateList’ is implicitly friends with itself 148 | friend class CovariateList; | ^~~~~~~~~~~~~ In file included from glmstarma.h:28: design.h: In constructor ‘Design::Design(const arma::mat&, const CovariateList*, const arma::mat&, const Orders*, const Family*, Neighborhood*, Neighborhood*, Neighborhood*)’: design.h:45:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 45 | for(int i = 0; i < orders->n_obs_effective; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c family_quasibinomial.cpp -o family_quasibinomial.o In file included from glmstarma.h:26, from family_quasibinomial.cpp:10: covariates.h: In member function ‘virtual arma::vec SpatialConstantCovariate::get_values_at(int)’: covariates.h:87:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 87 | if(t - burn_in >= values.n_elem){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: In member function ‘virtual arma::vec DefaultCovariate::get_values_at(int)’: covariates.h:119:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 119 | if(t - burn_in >= values.n_cols){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: At global scope: covariates.h:148:18: warning: class ‘CovariateList’ is implicitly friends with itself 148 | friend class CovariateList; | ^~~~~~~~~~~~~ In file included from glmstarma.h:28: design.h: In constructor ‘Design::Design(const arma::mat&, const CovariateList*, const arma::mat&, const Orders*, const Family*, Neighborhood*, Neighborhood*, Neighborhood*)’: design.h:45:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 45 | for(int i = 0; i < orders->n_obs_effective; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c family_quasipoisson.cpp -o family_quasipoisson.o In file included from glmstarma.h:26, from family_quasipoisson.cpp:10: covariates.h: In member function ‘virtual arma::vec SpatialConstantCovariate::get_values_at(int)’: covariates.h:87:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 87 | if(t - burn_in >= values.n_elem){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: In member function ‘virtual arma::vec DefaultCovariate::get_values_at(int)’: covariates.h:119:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 119 | if(t - burn_in >= values.n_cols){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: At global scope: covariates.h:148:18: warning: class ‘CovariateList’ is implicitly friends with itself 148 | friend class CovariateList; | ^~~~~~~~~~~~~ In file included from glmstarma.h:28: design.h: In constructor ‘Design::Design(const arma::mat&, const CovariateList*, const arma::mat&, const Orders*, const Family*, Neighborhood*, Neighborhood*, Neighborhood*)’: design.h:45:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 45 | for(int i = 0; i < orders->n_obs_effective; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fitting.cpp -o fitting.o In file included from glmstarma.h:26, from fitting.cpp:12: covariates.h: In member function ‘virtual arma::vec SpatialConstantCovariate::get_values_at(int)’: covariates.h:87:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 87 | if(t - burn_in >= values.n_elem){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: In member function ‘virtual arma::vec DefaultCovariate::get_values_at(int)’: covariates.h:119:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 119 | if(t - burn_in >= values.n_cols){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: At global scope: covariates.h:148:18: warning: class ‘CovariateList’ is implicitly friends with itself 148 | friend class CovariateList; | ^~~~~~~~~~~~~ In file included from glmstarma.h:28: design.h: In constructor ‘Design::Design(const arma::mat&, const CovariateList*, const arma::mat&, const Orders*, const Family*, Neighborhood*, Neighborhood*, Neighborhood*)’: design.h:45:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 45 | for(int i = 0; i < orders->n_obs_effective; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ fitting.cpp: In constructor ‘nloptr::nloptr(const arma::mat&, const Orders*, Design*, Family*, Neighborhood*, Rcpp::List)’: fitting.cpp:88:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 88 | for(int i = 0; i < model_orders->n_param; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~ fitting.cpp:113:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 113 | for(int i = 0; i < model_orders->n_param; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~ fitting.cpp: In member function ‘virtual arma::vec nloptr::fit(arma::vec)’: fitting.cpp:168:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 168 | for(int i = 0; i < start_value.n_elem; i++) | ~~^~~~~~~~~~~~~~~~~~~~ fitting.cpp: In static member function ‘static double nloptr::constraint_sum_of_absolutes(unsigned int, const double*, double*, void*)’: fitting.cpp:207:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 207 | for(int i = 0; i < n; i++) | ~~^~~ fitting.cpp:213:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 213 | for(int i = 0; i < n; i++) | ~~^~~ fitting.cpp: In static member function ‘static double nloptr::constraint_absolute_sum_lower(unsigned int, const double*, double*, void*)’: fitting.cpp:230:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 230 | for(int i = 0; i < n; i++) | ~~^~~ fitting.cpp:235:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 235 | for(int i = 0; i < n; i++) | ~~^~~ fitting.cpp: In static member function ‘static double nloptr::constraint_absolute_sum_upper(unsigned int, const double*, double*, void*)’: fitting.cpp:253:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 253 | for(int i = 0; i < n; i++) | ~~^~~ fitting.cpp:258:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 258 | for(int i = 0; i < n; i++) | ~~^~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c glmstarma.cpp -o glmstarma.o In file included from glmstarma.h:26, from glmstarma.cpp:13: covariates.h: In member function ‘virtual arma::vec SpatialConstantCovariate::get_values_at(int)’: covariates.h:87:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 87 | if(t - burn_in >= values.n_elem){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: In member function ‘virtual arma::vec DefaultCovariate::get_values_at(int)’: covariates.h:119:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 119 | if(t - burn_in >= values.n_cols){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: At global scope: covariates.h:148:18: warning: class ‘CovariateList’ is implicitly friends with itself 148 | friend class CovariateList; | ^~~~~~~~~~~~~ In file included from glmstarma.h:28: design.h: In constructor ‘Design::Design(const arma::mat&, const CovariateList*, const arma::mat&, const Orders*, const Family*, Neighborhood*, Neighborhood*, Neighborhood*)’: design.h:45:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 45 | for(int i = 0; i < orders->n_obs_effective; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c model.cpp -o model.o In file included from glmstarma.h:26, from model.cpp:10: covariates.h: In member function ‘virtual arma::vec SpatialConstantCovariate::get_values_at(int)’: covariates.h:87:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 87 | if(t - burn_in >= values.n_elem){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: In member function ‘virtual arma::vec DefaultCovariate::get_values_at(int)’: covariates.h:119:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 119 | if(t - burn_in >= values.n_cols){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: At global scope: covariates.h:148:18: warning: class ‘CovariateList’ is implicitly friends with itself 148 | friend class CovariateList; | ^~~~~~~~~~~~~ In file included from glmstarma.h:28: design.h: In constructor ‘Design::Design(const arma::mat&, const CovariateList*, const arma::mat&, const Orders*, const Family*, Neighborhood*, Neighborhood*, Neighborhood*)’: design.h:45:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 45 | for(int i = 0; i < orders->n_obs_effective; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c neighbors.cpp -o neighbors.o In file included from glmstarma.h:26, from neighbors.cpp:10: covariates.h: In member function ‘virtual arma::vec SpatialConstantCovariate::get_values_at(int)’: covariates.h:87:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 87 | if(t - burn_in >= values.n_elem){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: In member function ‘virtual arma::vec DefaultCovariate::get_values_at(int)’: covariates.h:119:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 119 | if(t - burn_in >= values.n_cols){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: At global scope: covariates.h:148:18: warning: class ‘CovariateList’ is implicitly friends with itself 148 | friend class CovariateList; | ^~~~~~~~~~~~~ In file included from glmstarma.h:28: design.h: In constructor ‘Design::Design(const arma::mat&, const CovariateList*, const arma::mat&, const Orders*, const Family*, Neighborhood*, Neighborhood*, Neighborhood*)’: design.h:45:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 45 | for(int i = 0; i < orders->n_obs_effective; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ neighbors.cpp: In member function ‘virtual arma::mat SparseNeighborhood::multiply_with_x(const int&, const arma::mat&) const’: neighbors.cpp:19:14: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const unsigned int’ [-Wsign-compare] 19 | if(order < max_order && !is_empty){ | ~~~~~~^~~~~~~~~~~ neighbors.cpp: In member function ‘virtual arma::mat DenseNeighborhood::multiply_with_x(const int&, const arma::mat&) const’: neighbors.cpp:67:14: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘const unsigned int’ [-Wsign-compare] 67 | if(order < max_order) | ~~~~~~^~~~~~~~~~~ neighbors.cpp: In static member function ‘static Neighborhood* Neighborhood::create(const Rcpp::List&, const double&, const bool&)’: neighbors.cpp:145:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 145 | for (int i = 0; i < K; ++i) { | ~~^~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c predict.cpp -o predict.o In file included from glmstarma.h:26, from predict.cpp:10: covariates.h: In member function ‘virtual arma::vec SpatialConstantCovariate::get_values_at(int)’: covariates.h:87:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 87 | if(t - burn_in >= values.n_elem){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: In member function ‘virtual arma::vec DefaultCovariate::get_values_at(int)’: covariates.h:119:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 119 | if(t - burn_in >= values.n_cols){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: At global scope: covariates.h:148:18: warning: class ‘CovariateList’ is implicitly friends with itself 148 | friend class CovariateList; | ^~~~~~~~~~~~~ In file included from glmstarma.h:28: design.h: In constructor ‘Design::Design(const arma::mat&, const CovariateList*, const arma::mat&, const Orders*, const Family*, Neighborhood*, Neighborhood*, Neighborhood*)’: design.h:45:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 45 | for(int i = 0; i < orders->n_obs_effective; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/nloptr/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c simulation.cpp -o simulation.o In file included from glmstarma.h:26, from simulation.cpp:10: covariates.h: In member function ‘virtual arma::vec SpatialConstantCovariate::get_values_at(int)’: covariates.h:87:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 87 | if(t - burn_in >= values.n_elem){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: In member function ‘virtual arma::vec DefaultCovariate::get_values_at(int)’: covariates.h:119:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 119 | if(t - burn_in >= values.n_cols){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ covariates.h: At global scope: covariates.h:148:18: warning: class ‘CovariateList’ is implicitly friends with itself 148 | friend class CovariateList; | ^~~~~~~~~~~~~ In file included from glmstarma.h:28: design.h: In constructor ‘Design::Design(const arma::mat&, const CovariateList*, const arma::mat&, const Orders*, const Family*, Neighborhood*, Neighborhood*, Neighborhood*)’: design.h:45:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 45 | for(int i = 0; i < orders->n_obs_effective; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o glmSTARMA.so RcppExports.o covariates.o dglmstarma.o family.o family_binomial.o family_gamma.o family_inverse_gauss.o family_negative_binomial.o family_normal.o family_poisson.o family_quasibinomial.o family_quasipoisson.o fitting.o glmstarma.o model.o neighbors.o predict.o simulation.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUf77tF/R.INSTALL85840384d847c/glmSTARMA/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUf77tF/R.INSTALL85840384d847c/glmSTARMA/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUf77tF/R.INSTALL85840384d847c/glmSTARMA/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-glmSTARMA/00new/glmSTARMA/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘glmSTARMA’ finding HTML links ... done QIC html SpatialConstant html TimeConstant html chickenpox html coef.glmstarma html delete_glmSTARMA_data html dglmstarma html dglmstarma.control html dglmstarma.sim html fitted.glmstarma html generateW html glmSTARMA-package html glmstarma html glmstarma.control html glmstarma.sim html glmstarma_sim.control html information_criteria html load_data html residuals-glmstarma html rota html sandwich_variance html sst html stfamily html summary.dglmstarma html summary.glmstarma html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glmSTARMA)