* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘gleam’ ...
** this is package ‘gleam’ version ‘0.8.0’
** package ‘gleam’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘gleam’
    finding HTML links ... done
    assign_allocation_shares                html  
    calc_allocated_emissions                html  
    calc_allocation_shares                  html  
    calc_avg_weights                        html  
    calc_ch4_enteric                        html  
    calc_ch4_manure                         html  
    calc_ch4_ration_rice                    html  
    calc_co2_ration_crop_activities         html  
    calc_co2_ration_fertilizer              html  
    calc_co2_ration_luc_nopeat              html  
    calc_co2_ration_luc_peat                html  
    calc_co2_ration_pesticides              html  
    calc_co2eq                              html  
    calc_cohort_to_herd_aggregation         html  
    calc_cohort_totals                      html  
    calc_cohort_weights                     html  
    calc_conversion_factor_ym               html  
    calc_daily_weight_gain                  html  
    calc_fecundity_rates                    html  
    calc_feed_digestibility_fraction        html  
    calc_fibre_allocation_energy            html  
    calc_fibre_production                   html  
    calc_meat_allocation_energy             html  
    calc_meat_production                    html  
    calc_metabolic_energy_req_activity      html  
    calc_metabolic_energy_req_fibre         html  
    calc_metabolic_energy_req_growth        html  
    calc_metabolic_energy_req_lactation     html  
    calc_metabolic_energy_req_maintenance   html  
    calc_metabolic_energy_req_pregnancy     html  
    calc_metabolic_energy_req_work          html  
    calc_milk_allocation_energy             html  
    calc_milk_production                    html  
    calc_n2o_manure_direct                  html  
    calc_n2o_manure_leaching                html  
    calc_n2o_manure_total                   html  
    calc_n2o_manure_volatilization          html  
    calc_n2o_ration_crop_residues           html  
    calc_n2o_ration_fertilizer              html  
    calc_n2o_ration_manure                  html  
    calc_nitrogen_excretion                 html  
    calc_nitrogen_intake                    html  
    calc_nitrogen_retention                 html  
    calc_projected_population_size          html  
    calc_ration_ash                         html  
    calc_ration_digestibility               html  
    calc_ration_gross_energy                html  
    calc_ration_intake                      html  
    calc_ration_metabolizable_energy        html  
    calc_ration_nitrogen_content            html  
    calc_ration_urinary_energy_fraction     html  
    calc_reg_growth                         html  
    calc_rem_maintenance                    html  
    calc_steady_state_structure             html  
    calc_summary_offtake                    html  
    calc_total_metabolic_energy_req         html  
    calc_transition_probabilities           html  
    calc_volatile_solids                    html  
    calc_work_allocation_energy             html  
    gleam-package                           html  
    gleam_cohorts                           html  
    gleam_cohorts_female                    html  
    gleam_cohorts_male                      html  
    gleam_cohorts_names                     html  
    gleam_emissions_meta                    html  
    gleam_feed_emissions_meta               html  
    gleam_feed_meta                         html  
    gleam_nitrogen_balance_meta             html  
    gleam_non_allocated_emissions           html  
    gleam_production_meta                   html  
    gleam_species                           html  
    gleam_species_milk_producers            html  
    gleam_species_names                     html  
    gleam_species_non_poultry               html  
    gleam_species_ruminants                 html  
    run_aggregation_module                  html  
    run_allocation_module                   html  
    run_demographic_herd_module             html  
    run_emissions_enteric_module            html  
    run_emissions_manure_module             html  
    run_emissions_ration_module             html  
    run_gleam                               html  
    run_metabolic_energy_req_module         html  
    run_nitrogen_balance_module             html  
    run_production_module                   html  
    run_ration_quality_module               html  
    run_weights_module                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gleam)