Install log for 'geos'

* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘geos’ ...
** package ‘geos’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpG75gSY/R.INSTALL3479278063760/geos/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libgeos/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/wk/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c geos-basic-strtree.c -o geos-basic-strtree.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libgeos/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/wk/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c geos-binary-atomic.c -o geos-binary-atomic.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libgeos/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/wk/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c geos-binary-geometry.c -o geos-binary-geometry.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libgeos/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/wk/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c geos-common.c -o geos-common.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libgeos/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/wk/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c geos-geometry.c -o geos-geometry.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libgeos/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/wk/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c geos-io.c -o geos-io.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libgeos/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/wk/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c geos-make.c -o geos-make.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libgeos/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/wk/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c geos-polygonize.c -o geos-polygonize.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libgeos/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/wk/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c geos-segment.c -o geos-segment.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libgeos/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/wk/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c geos-strtree.c -o geos-strtree.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libgeos/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/wk/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c geos-unary-atomic.c -o geos-unary-atomic.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libgeos/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/wk/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c geos-unary-geometry.c -o geos-unary-geometry.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libgeos/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/wk/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c geos-writer.cpp -o geos-writer.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libgeos/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/wk/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c handle-geos.c -o handle-geos.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libgeos/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/wk/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libgeos/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/wk/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c libgeos-impl.c -o libgeos-impl.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/libgeos/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/wk/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c wk-impl.c -o wk-impl.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o geos.so geos-basic-strtree.o geos-binary-atomic.o geos-binary-geometry.o geos-common.o geos-geometry.o geos-io.o geos-make.o geos-polygonize.o geos-segment.o geos-strtree.o geos-unary-atomic.o geos-unary-geometry.o geos-writer.o handle-geos.o init.o libgeos-impl.o wk-impl.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpG75gSY/R.INSTALL3479278063760/geos/src'
make[1]: Entering directory '/tmp/RtmpG75gSY/R.INSTALL3479278063760/geos/src'
make[1]: Leaving directory '/tmp/RtmpG75gSY/R.INSTALL3479278063760/geos/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-geos/00new/geos/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘geos’
    finding HTML links ... done
    as_geos_geometry                        html  
    geos-package                            html  
    geos_area                               html  
    geos_basic_strtree                      html  
    geos_buffer                             html  
    geos_centroid                           html  
    geos_create_rectangle                   html  
    geos_delaunay_triangles                 html  
    geos_disjoint                           html  
    geos_disjoint_matrix                    html  
    geos_distance                           html  
    geos_empty                              html  
    geos_geometry_n                         html  
    geos_inner_join                         html  
    geos_intersection                       html  
    geos_is_valid                           html  
    geos_make_point                         html  
    geos_minimum_bounding_circle            html  
    geos_nearest                            html  
    geos_polygonize                         html  
    geos_project                            html  
    geos_read_wkt                           html  
    geos_relate                             html  
    geos_segment_intersection               html  
    geos_strtree                            html  
    geos_unnest                             html  
    geos_version                            html  
    plot.geos_geometry                      html  
    vctrs-methods                           html  
    wk-methods                              html  
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geos)