Install log for 'geometry'

* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘geometry’ ...
** package ‘geometry’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpPkqkfs/R.INSTALL7736e3a26a6ed/geometry/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c QuadTree.cpp -o QuadTree.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Rconvhulln.c -o Rconvhulln.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Rdelaunayn.c -o Rdelaunayn.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Rgeometry.c -o Rgeometry.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Rhalfspacen.c -o Rhalfspacen.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Rinhulln.c -o Rinhulln.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Rtsearch.cpp -o Rtsearch.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Rtsearch_orig.c -o Rtsearch_orig.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Rtsearchn.c -o Rtsearchn.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c geom2_r.c -o geom2_r.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c geom_r.c -o geom_r.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c geometry_init.c -o geometry_init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c global_r.c -o global_r.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c io_r.c -o io_r.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c libqhull_r.c -o libqhull_r.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mem_r.c -o mem_r.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c merge_r.c -o merge_r.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c poly2_r.c -o poly2_r.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c poly_r.c -o poly_r.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c qset_r.c -o qset_r.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c random_r.c -o random_r.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c rboxlib_r.c -o rboxlib_r.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c stat_r.c -o stat_r.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c user_r.c -o user_r.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c usermem_r.c -o usermem_r.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c userprintf_r.c -o userprintf_r.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -include Rgeometry.h -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c userprintf_rbox_r.c -o userprintf_rbox_r.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o geometry.so QuadTree.o Rconvhulln.o RcppExports.o Rdelaunayn.o Rgeometry.o Rhalfspacen.o Rinhulln.o Rtsearch.o Rtsearch_orig.o Rtsearchn.o geom2_r.o geom_r.o geometry_init.o global_r.o io_r.o libqhull_r.o mem_r.o merge_r.o poly2_r.o poly_r.o qset_r.o random_r.o rboxlib_r.o stat_r.o user_r.o usermem_r.o userprintf_r.o userprintf_rbox_r.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpPkqkfs/R.INSTALL7736e3a26a6ed/geometry/src'
make[1]: Entering directory '/tmp/RtmpPkqkfs/R.INSTALL7736e3a26a6ed/geometry/src'
make[1]: Leaving directory '/tmp/RtmpPkqkfs/R.INSTALL7736e3a26a6ed/geometry/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-geometry/00new/geometry/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘geometry’
    finding HTML links ... done
    Unique                                  html  
    bary2cart                               html  
    cart2bary                               html  
    cart2pol                                html  
    cart2sph                                html  
    convhulln                               html  
    delaunayn                               html  
    distmesh2d                              html  
    distmeshnd                              html  
    dot                                     html  
    entry.value                             html  
    extprod3d                               html  
    feasible.point                          html  
    halfspacen                              html  
    inhulln                                 html  
    intersectn                              html  
    matmax                                  html  
    mesh.dcircle                            html  
    mesh.diff                               html  
    mesh.drectangle                         html  
    mesh.dsphere                            html  
    mesh.hunif                              html  
    pol2cart                                html  
    polyarea                                html  
    rbox                                    html  
    sph2cart                                html  
    surf.tri                                html  
    tetramesh                               html  
    to.mesh3d                               html  
    trimesh                                 html  
    tsearch                                 html  
    tsearchn                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geometry)