• using R version 4.5.0 Patched (2025-05-11 r88197)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-19) 14.2.0     GNU Fortran (Debian 14.2.0-19) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘geocmeans/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘geocmeans’ version ‘0.3.4’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘geocmeans’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
• checking C++ specification ... OK
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [12s/14s] OK
• checking whether the package can be loaded with stated dependencies ... [12s/14s] OK
• checking whether the package can be unloaded cleanly ... [11s/13s] OK
• checking whether the namespace can be loaded with stated dependencies ... [11s/13s] OK
• checking whether the namespace can be unloaded cleanly ... [12s/15s] OK
• checking loading without being on the library search path ... [12s/15s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [59s/78s] OK
• checking Rd files ... [13s/15s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [40s/50s] OK Examples with CPU (user + system) or elapsed time > 5s                   user system elapsed summarizeClusters 7.33 0.091 8.281
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [29s/67s] OK   Running ‘testthat.R’ [29s/67s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [80s/102s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘introduction.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-3-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18645 bytes Input file size = 18747 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16148   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16148 Output IDAT size = 16148 bytes (2497 bytes decrease) Output file size = 16226 bytes (2521 bytes = 13.45% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-4-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 107620 bytes Input file size = 107854 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79039   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79039 Output IDAT size = 79039 bytes (28581 bytes decrease) Output file size = 79117 bytes (28737 bytes = 26.64% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-10-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 70346 bytes Input file size = 70520 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 60924   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 60924 Output IDAT size = 60924 bytes (9422 bytes decrease) Output file size = 61002 bytes (9518 bytes = 13.50% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-11-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 78691 bytes Input file size = 78877 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62458   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62458 Output IDAT size = 62458 bytes (16233 bytes decrease) Output file size = 62536 bytes (16341 bytes = 20.72% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-12-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 80727 bytes Input file size = 80913 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 65064   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 65064 Output IDAT size = 65064 bytes (15663 bytes decrease) Output file size = 65142 bytes (15771 bytes = 19.49% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 64008 bytes Input file size = 64170 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 56100   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 56100 Output IDAT size = 56100 bytes (7908 bytes decrease) Output file size = 56178 bytes (7992 bytes = 12.45% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-14-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 83714 bytes Input file size = 83912 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63176   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63176 Output IDAT size = 63176 bytes (20538 bytes decrease) Output file size = 63254 bytes (20658 bytes = 24.62% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-17-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21737 bytes Input file size = 21839 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17094   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17094 Output IDAT size = 17094 bytes (4643 bytes decrease) Output file size = 17172 bytes (4667 bytes = 21.37% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21771 bytes Input file size = 21873 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17340   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17340 Output IDAT size = 17340 bytes (4431 bytes decrease) Output file size = 17418 bytes (4455 bytes = 20.37% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23894 bytes Input file size = 23996 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19810   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19810 Output IDAT size = 19810 bytes (4084 bytes decrease) Output file size = 19888 bytes (4108 bytes = 17.12% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-20-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20787 bytes Input file size = 20889 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17935   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17935 Output IDAT size = 17935 bytes (2852 bytes decrease) Output file size = 18013 bytes (2876 bytes = 13.77% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 17108 bytes Input file size = 17210 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14213   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14213 Output IDAT size = 14213 bytes (2895 bytes decrease) Output file size = 14291 bytes (2919 bytes = 16.96% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14382 bytes Input file size = 14472 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12568   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12568 Output IDAT size = 12568 bytes (1814 bytes decrease) Output file size = 12646 bytes (1826 bytes = 12.62% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-25-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15888 bytes Input file size = 15978 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14129   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14129 Output IDAT size = 14129 bytes (1759 bytes decrease) Output file size = 14207 bytes (1771 bytes = 11.08% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-28-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 68968 bytes Input file size = 69142 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 60365   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 60365 Output IDAT size = 60365 bytes (8603 bytes decrease) Output file size = 60443 bytes (8699 bytes = 12.58% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-29-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 77090 bytes Input file size = 77276 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 61183   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 61183 Output IDAT size = 61183 bytes (15907 bytes decrease) Output file size = 61261 bytes (16015 bytes = 20.72% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-30-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 81357 bytes Input file size = 81543 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 66884   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 66884 Output IDAT size = 66884 bytes (14473 bytes decrease) Output file size = 66962 bytes (14581 bytes = 17.88% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-31-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 67582 bytes Input file size = 67756 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 58871   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 58871 Output IDAT size = 58871 bytes (8711 bytes decrease) Output file size = 58949 bytes (8807 bytes = 13.00% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-32-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 90546 bytes Input file size = 90756 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 68057   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 68057 Output IDAT size = 68057 bytes (22489 bytes decrease) Output file size = 68135 bytes (22621 bytes = 24.93% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/geocmeans.Rcheck/vign_test/geocmeans/vignettes/introduction_files/figure-html/unnamed-chunk-36-1.png 480x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 107485 bytes Input file size = 107719 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79786   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79786 Output IDAT size = 79786 bytes (27699 bytes decrease) Output file size = 79864 bytes (27855 bytes = 25.86% decrease) Quitting from introduction.Rmd:487-489 [unnamed-chunk-38] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `st_transform.bbox()`: ! method not available for GDAL: 3.10.3 --- Backtrace:      ▆   1. └─tools::buildVignettes(...)   2. ├─base::tryCatch(...)   3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)   4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])   5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)   6. └─engine$weave(file, quiet = quiet, encoding = enc)   7. └─knitr:::vweave_rmarkdown(...)   8. └─rmarkdown::render(...)   9. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)  10. └─knitr:::process_file(text, output)  11. ├─xfun:::handle_error(...)  12. ├─base::withCallingHandlers(...)  13. └─knitr:::process_group(group)  14. └─knitr:::call_block(x)  15. └─knitr:::block_exec(params)  16. └─knitr:::eng_r(options)  17. ├─knitr:::in_input_dir(...)  18. │ └─knitr:::in_dir(input_dir(), expr)  19. └─knitr (local) evaluate(...)  20. └─evaluate::evaluate(...)  21. ├─base::withRestarts(...)  22. │ └─base (local) withRestartList(expr, restarts)  23. │ ├─base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])  24. │ │ └─base (local) doWithOneRestart(return(expr), restart)  25. │ └─base (local) withRestartList(expr, restarts[-nr])  26. │ └─base (local) withOneRestart(expr, restarts[[1L]])  27. │ └─base (local) doWithOneRestart(return(expr), restart)  28. ├─evaluate:::with_handlers(...)  29. │ ├─base::eval(call)  30. │ │ └─base::eval(call)  31. │ └─base::withCallingHandlers(...)  32. └─watcher$print_value(ev$value, ev$visible, envir)  33. ├─base::withVisible(handle_value(handler, value, visible, envir))  34. └─evaluate:::handle_value(handler, value, visible, envir)  35. └─handler$value(value, visible)  36. └─knitr (local) fun(x, options = options)  37. ├─base::withVisible(knit_print(x, ...))  38. ├─knitr::knit_print(x, ...)  39. └─tmap:::knit_print.tmap(x, ...)  40. └─tmap:::print.tmap(x, knit = TRUE, options = options, ...)  41. └─tmap:::step4_plot(...)  42. ├─sf::st_transform(sf::st_bbox(), crs = crs)  43. └─sf:::st_transform.bbox(sf::st_bbox(), crs = crs) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'introduction.Rmd' failed with diagnostics: method not available for GDAL: 3.10.3 --- failed re-building ‘introduction.Rmd’ SUMMARY: processing the following file failed:   ‘introduction.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [7s/10s] OK
• checking HTML version of manual ... [3s/6s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR