* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘gensvm’ ...
** package ‘gensvm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp013Wlg/R.INSTALL3db82874263372/gensvm/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm_wrapper.c -o gensvm_wrapper.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_base.c -o gensvm/src/gensvm_base.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_checks.c -o gensvm/src/gensvm_checks.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_cmdarg.c -o gensvm/src/gensvm_cmdarg.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_consistency.c -o gensvm/src/gensvm_consistency.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_copy.c -o gensvm/src/gensvm_copy.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_cross_validation.c -o gensvm/src/gensvm_cross_validation.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_cv_util.c -o gensvm/src/gensvm_cv_util.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_debug.c -o gensvm/src/gensvm_debug.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_grid.c -o gensvm/src/gensvm_grid.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_gridsearch.c -o gensvm/src/gensvm_gridsearch.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_init.c -o gensvm/src/gensvm_init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_io.c -o gensvm/src/gensvm_io.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_kernel.c -o gensvm/src/gensvm_kernel.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_memory.c -o gensvm/src/gensvm_memory.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_optimize.c -o gensvm/src/gensvm_optimize.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_predict.c -o gensvm/src/gensvm_predict.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_print.c -o gensvm/src/gensvm_print.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_queue.c -o gensvm/src/gensvm_queue.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_r_utils.c -o gensvm/src/gensvm_r_utils.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_rand.c -o gensvm/src/gensvm_rand.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_simplex.c -o gensvm/src/gensvm_simplex.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_sparse.c -o gensvm/src/gensvm_sparse.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_strutil.c -o gensvm/src/gensvm_strutil.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_sv.c -o gensvm/src/gensvm_sv.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_task.c -o gensvm/src/gensvm_task.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_timer.c -o gensvm/src/gensvm_timer.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_train.c -o gensvm/src/gensvm_train.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_update.c -o gensvm/src/gensvm_update.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -Igensvm/include/ -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCOLUMN_MAJOR_ORDER -DVERSION=0.2.1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gensvm/src/gensvm_zv.c -o gensvm/src/gensvm_zv.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o gensvm.so gensvm_wrapper.o gensvm/src/gensvm_base.o gensvm/src/gensvm_checks.o gensvm/src/gensvm_cmdarg.o gensvm/src/gensvm_consistency.o gensvm/src/gensvm_copy.o gensvm/src/gensvm_cross_validation.o gensvm/src/gensvm_cv_util.o gensvm/src/gensvm_debug.o gensvm/src/gensvm_grid.o gensvm/src/gensvm_gridsearch.o gensvm/src/gensvm_init.o gensvm/src/gensvm_io.o gensvm/src/gensvm_kernel.o gensvm/src/gensvm_memory.o gensvm/src/gensvm_optimize.o gensvm/src/gensvm_predict.o gensvm/src/gensvm_print.o gensvm/src/gensvm_queue.o gensvm/src/gensvm_r_utils.o gensvm/src/gensvm_rand.o gensvm/src/gensvm_simplex.o gensvm/src/gensvm_sparse.o gensvm/src/gensvm_strutil.o gensvm/src/gensvm_sv.o gensvm/src/gensvm_task.o gensvm/src/gensvm_timer.o gensvm/src/gensvm_train.o gensvm/src/gensvm_update.o gensvm/src/gensvm_zv.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
mv gensvm.so gensvm_wrapper.so
make[1]: Leaving directory '/tmp/Rtmp013Wlg/R.INSTALL3db82874263372/gensvm/src'
make[1]: Entering directory '/tmp/Rtmp013Wlg/R.INSTALL3db82874263372/gensvm/src'
make[1]: Leaving directory '/tmp/Rtmp013Wlg/R.INSTALL3db82874263372/gensvm/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-gensvm/00new/gensvm/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘gensvm’
finding HTML links ... done
coef.gensvm html
coef.gensvm.grid html
fitted.gensvm html
fitted.gensvm.grid html
gensvm-package html
gensvm html
gensvm.accuracy html
gensvm.generate.cv.idx html
gensvm.grid html
gensvm.load.full.grid html
gensvm.load.small.grid html
gensvm.load.tiny.grid html
gensvm.maxabs.scale html
gensvm.rank.score html
gensvm.refit html
gensvm.train.test.split html
gensvm.validate.param.grid html
gensvm.validate.params html
plot.gensvm html
plot.gensvm.grid html
predict.gensvm html
predict.gensvm.grid html
print.gensvm html
print.gensvm.grid html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gensvm)