* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘genio’ ...
** this is package ‘genio’ version ‘1.1.2’
** package ‘genio’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyIkryM/R.INSTALL17c1d5407e8013/genio/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c count_lines_cpp.cpp -o count_lines_cpp.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c read_bed_cpp.cpp -o read_bed_cpp.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c write_bed_cpp.cpp -o write_bed_cpp.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o genio.so RcppExports.o count_lines_cpp.o read_bed_cpp.o write_bed_cpp.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyIkryM/R.INSTALL17c1d5407e8013/genio/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyIkryM/R.INSTALL17c1d5407e8013/genio/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyIkryM/R.INSTALL17c1d5407e8013/genio/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-genio/00new/genio/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘genio’
    finding HTML links ... done
    count_lines                             html  
    delete_files_grm                        html  
    delete_files_phen                       html  
    delete_files_plink                      html  
    genio                                   html  
    geno_to_char                            html  
    ind_to_fam                              html  
    make_bim                                html  
    make_fam                                html  
    read_bed                                html  
    read_bim                                html  
    read_eigenvec                           html  
    read_fam                                html  
    read_grm                                html  
    read_ind                                html  
    read_matrix                             html  
    read_phen                               html  
    read_plink                              html  
    read_snp                                html  
    require_files_grm                       html  
    require_files_phen                      html  
    require_files_plink                     html  
    sex_to_char                             html  
    sex_to_int                              html  
    tidy_kinship                            html  
    write_bed                               html  
    write_bim                               html  
    write_eigenvec                          html  
    write_fam                               html  
    write_grm                               html  
    write_ind                               html  
    write_matrix                            html  
    write_phen                              html  
    write_plink                             html  
    write_snp                               html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (genio)