Install log for 'gaselect'

* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘gaselect’ ...
** package ‘gaselect’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++-13 -std=gnu++17 accepts -g... yes
checking how to run the C++ preprocessor... g++-13 -std=gnu++17 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdint.h... (cached) yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking climits usability... yes
checking climits presence... yes
checking for climits... yes
Type unsigned long long is supported
uint16_t and unit8_t are available in stdint.h
uint16_t and unit8_t are available in inttypes.h
Found builtin CTZ method (for unsigned long)
Found builtin CTZ method (for unsigned long long)
checking for ffsl... yes
checking for ffsll... yes
Found builtin popcount method (for unsigned long)
Found builtin popcount method (for unsigned long long)
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/autoconfig.h
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
using C++17
make[1]: Entering directory '/tmp/RtmpbuG94K/R.INSTALL298f6a664e27f4/gaselect/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -pthread -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__STDC_LIMIT_MACROS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c BICEvaluator.cpp -o BICEvaluator.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -pthread -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__STDC_LIMIT_MACROS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Chromosome.cpp -o Chromosome.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -pthread -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__STDC_LIMIT_MACROS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GenAlg.cpp -o GenAlg.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -pthread -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__STDC_LIMIT_MACROS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c LMEvaluator.cpp -o LMEvaluator.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -pthread -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__STDC_LIMIT_MACROS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Logger.cpp -o Logger.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -pthread -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__STDC_LIMIT_MACROS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c MultiThreadedPopulation.cpp -o MultiThreadedPopulation.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -pthread -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__STDC_LIMIT_MACROS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PLS.cpp -o PLS.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -pthread -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__STDC_LIMIT_MACROS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PLSEvaluator.cpp -o PLSEvaluator.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -pthread -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__STDC_LIMIT_MACROS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PLSSimpls.cpp -o PLSSimpls.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -pthread -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__STDC_LIMIT_MACROS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RNG.cpp -o RNG.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -pthread -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__STDC_LIMIT_MACROS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ShuffledSet.cpp -o ShuffledSet.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -pthread -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__STDC_LIMIT_MACROS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c SingleThreadPopulation.cpp -o SingleThreadPopulation.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -pthread -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -D__STDC_LIMIT_MACROS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c UserFunEvaluator.cpp -o UserFunEvaluator.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o gaselect.so BICEvaluator.o Chromosome.o GenAlg.o LMEvaluator.o Logger.o MultiThreadedPopulation.o PLS.o PLSEvaluator.o PLSSimpls.o RNG.o ShuffledSet.o SingleThreadPopulation.o UserFunEvaluator.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -pthread -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpbuG94K/R.INSTALL298f6a664e27f4/gaselect/src'
make[1]: Entering directory '/tmp/RtmpbuG94K/R.INSTALL298f6a664e27f4/gaselect/src'
make[1]: Leaving directory '/tmp/RtmpbuG94K/R.INSTALL298f6a664e27f4/gaselect/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-gaselect/00new/gaselect/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘gaselect’
    finding HTML links ... done
    GenAlg-class                            html  
    GenAlg-constructor                      html  
    GenAlgControl-class                     html  
    GenAlgControl-constructor               html  
    GenAlgEvaluator-class                   html  
    GenAlgFitEvaluator-class                html  
    GenAlgFitEvaluator-constructor          html  
    GenAlgLMEvaluator-class                 html  
    GenAlgLMEvaluator-constructor           html  
    GenAlgPLSEvaluator-class                html  
    GenAlgPLSEvaluator-constructor          html  
    GenAlgUserEvaluator-class               html  
    GenAlgUserEvaluator-constructor         html  
    evaluate-methods                        html  
    fitness                                 html  
    fitnessEvolution                        html  
    formatSegmentation-methods              html  
    getEvalFun-methods                      html  
    subsets                                 html  
    toCControlList-methods                  html  
    trueFitnessVal-methods                  html  
    validData-methods                       html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gaselect)