* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘gamselBayes’ ...
** package ‘gamselBayes’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpQHJs1C/R.INSTALL519c7322a3942/gamselBayes/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c approxLogML.cpp -o approxLogML.o
approxLogML.cpp: In function ‘double approxLogML(double, double, double, arma::vec, double, arma::vec, arma::vec, arma::mat, double, double, double, double, double, arma::vec, arma::vec, arma::vec, arma::mat, arma::mat, arma::vec, arma::vec, double, arma::vec, double, double, double, double, double, int, arma::uvec, int, arma::vec, arma::vec)’:
approxLogML.cpp:71:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
71 | for (int k=0; k<ncZvec(j); k++)
| ~^~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c drawInvGaussVec.cpp -o drawInvGaussVec.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gamselBayesMCMCinner.cpp -o gamselBayesMCMCinner.o
gamselBayesMCMCinner.cpp: In function ‘Rcpp::List gamselBayesMCMCinner(arma::vec, arma::mat, arma::mat, int, arma::uvec, int, int, arma::uvec, arma::uvec, arma::vec, arma::mat, arma::vec, arma::mat, arma::mat, double, double, double, double, double, double, int, int)’:
gamselBayesMCMCinner.cpp:125:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
125 | for (int k=0; k<ncZvec(j); k++)
| ~^~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gamselBayesMFVBinner.cpp -o gamselBayesMFVBinner.o
gamselBayesMFVBinner.cpp: In function ‘Rcpp::List gamselBayesMFVBinner(arma::vec, arma::mat, arma::mat, int, arma::uvec, int, int, arma::uvec, arma::uvec, arma::vec, arma::mat, arma::vec, arma::mat, arma::mat, double, double, double, double, double, double, int, double, int)’:
gamselBayesMFVBinner.cpp:150:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
150 | for (int k=0; k<ncZvec(j); k++)
| ~^~~~~~~~~~
gamselBayesMFVBinner.cpp:373:40: warning: ‘lambdaqaEps’ may be used uninitialized [-Wmaybe-uninitialized]
373 | logMargLik(itNum-1) = approxLogML(muqBeta0,sigsqqBeta0,logitBeta,muqgammaBeta,
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
374 | muqrecipSigsqBeta,muqbBeta,muqBetaTilde,SigmaqBetaTilde,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
375 | muqrecipaBeta,lambdaqSigsqBeta,sBetaHYP,lambdaqaBeta,logitU,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
376 | muqgammaU,muqrecipSigsqU,muqbU,muqUtilde,sigsqqUtilde,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
377 | muqrecipaU,lambdaqSigsqU,sUHYP,lambdaqaU,muqrecipaEps,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
378 | muqrecipSigsqEps,lambdaqaEps,lambdaqSigsqEps,sEpsHYP,n,ncZvec,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
379 | familyNum,ySign,omega20);
| ~~~~~~~~~~~~~~~~~~~~~~~~
gamselBayesMFVBinner.cpp:65:11: note: ‘lambdaqaEps’ was declared here
65 | double lambdaqaEps;
| ^~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c logPhi.cpp -o logPhi.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c omitMatCol.cpp -o omitMatCol.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c omitVecEnt.cpp -o omitVecEnt.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c printPercMsgs.cpp -o printPercMsgs.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rTruncNormPos.cpp -o rTruncNormPos.o
rTruncNormPos.cpp: In function ‘double rTruncNormPos(double)’:
rTruncNormPos.cpp:59:13: warning: ‘x’ may be used uninitialized [-Wmaybe-uninitialized]
59 | return (x);
| ^
rTruncNormPos.cpp:25:11: note: ‘x’ was declared here
25 | double x;
| ^
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c zetad.cpp -o zetad.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o gamselBayes.so RcppExports.o approxLogML.o drawInvGaussVec.o gamselBayesMCMCinner.o gamselBayesMFVBinner.o logPhi.o omitMatCol.o omitVecEnt.o printPercMsgs.o rTruncNormPos.o zetad.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpQHJs1C/R.INSTALL519c7322a3942/gamselBayes/src'
make[1]: Entering directory '/tmp/RtmpQHJs1C/R.INSTALL519c7322a3942/gamselBayes/src'
make[1]: Leaving directory '/tmp/RtmpQHJs1C/R.INSTALL519c7322a3942/gamselBayes/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-gamselBayes/00new/gamselBayes/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘gamselBayes’
finding HTML links ... done
checkChains html
effectTypes html
effectTypesVector html
gamselBayes html
gamselBayes.control html
gamselBayesUpdate html
gamselBayesVignette html
plot.gamselBayes html
predict.gamselBayes html
summary.gamselBayes html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gamselBayes)