Install log for 'fstcore'

* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘fstcore’ ...
** package ‘fstcore’ successfully unpacked and MD5 sums checked
** using staged installation
1.8.1
Found pkg-config cflags and libs for LZ4!
1.8.1
Found pkg-config cflags and libs for ZSTD!
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpwUcf5p/R.INSTALL1dbe56387714e4/fstcore/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c flex_store.cpp -o flex_store.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fst_blockrunner_char.cpp -o fst_blockrunner_char.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fst_compress.cpp -o fst_compress.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fst_error.cpp -o fst_error.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fst_table.cpp -o fst_table.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c openmp.cpp -o openmp.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c versions.cpp -o versions.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fstlib/compression/compression.cpp -o fstlib/compression/compression.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fstlib/compression/compressor.cpp -o fstlib/compression/compressor.o
ar rcs libCOMPRESSION.a fstlib/compression/compression.o fstlib/compression/compressor.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fstlib/interface/openmphelper.cpp -o fstlib/interface/openmphelper.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fstlib/interface/fststore.cpp -o fstlib/interface/fststore.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fstlib/logical/logical_v10.cpp -o fstlib/logical/logical_v10.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fstlib/integer/integer_v8.cpp -o fstlib/integer/integer_v8.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fstlib/byte/byte_v12.cpp -o fstlib/byte/byte_v12.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fstlib/double/double_v9.cpp -o fstlib/double/double_v9.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fstlib/character/character_v6.cpp -o fstlib/character/character_v6.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fstlib/factor/factor_v7.cpp -o fstlib/factor/factor_v7.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fstlib/blockstreamer/blockstreamer_v2.cpp -o fstlib/blockstreamer/blockstreamer_v2.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fstlib/integer64/integer64_v11.cpp -o fstlib/integer64/integer64_v11.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fstlib/byteblock/byteblock_v13.cpp -o fstlib/byteblock/byteblock_v13.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Ifstlib -Ifstlib/LZ4 -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c fstlib/LZ4/xxhash.c -o fstlib/LZ4/xxhash.o
ar rcs libFRAME.a fstlib/interface/openmphelper.o fstlib/interface/fststore.o fstlib/logical/logical_v10.o fstlib/integer/integer_v8.o fstlib/byte/byte_v12.o fstlib/double/double_v9.o fstlib/character/character_v6.o fstlib/factor/factor_v7.o fstlib/blockstreamer/blockstreamer_v2.o fstlib/integer64/integer64_v11.o fstlib/byteblock/byteblock_v13.o fstlib/LZ4/xxhash.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o fstcore.so RcppExports.o flex_store.o fst_blockrunner_char.o fst_compress.o fst_error.o fst_table.o openmp.o versions.o -fopenmp ./libFRAME.a ./libCOMPRESSION.a -llz4 -lzstd -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpwUcf5p/R.INSTALL1dbe56387714e4/fstcore/src'
make[1]: Entering directory '/tmp/RtmpwUcf5p/R.INSTALL1dbe56387714e4/fstcore/src'
make[1]: Leaving directory '/tmp/RtmpwUcf5p/R.INSTALL1dbe56387714e4/fstcore/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-fstcore/00new/fstcore/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘fstcore’
    finding HTML links ... done
    fstcore-package                         html  
    lib_versions                            html  
    threads_fstlib                          html  
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fstcore)