* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘fslr’ ...
** this is package ‘fslr’ version ‘2.25.3’
** package ‘fslr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘fslr’
finding HTML links ... done
applytopup html
aux_file-methods html
bitpix-methods html
cal_max-methods html
cal_min-methods html
check_file html
Rd warning: check_file.Rd:12: missing link ‘checkimg’
checkout html
data_type-methods html
datatype-methods html
descrip-methods html
dim_-methods html
download_fsl html
dtifit html
eddy html
eddy_correct html
enforce_form html
face_removal_mask html
fast html
Rd warning: fast.Rd:60: missing link ‘readnii’
Rd warning: fast.Rd:75: missing link ‘readnii’
fast.help html
flirt html
Rd warning: flirt.Rd:35: missing link ‘readnii’
Rd warning: flirt.Rd:43: missing link ‘readnii’
flirt.help html
flirt_apply html
Rd warning: flirt_apply.Rd:32: missing link ‘readnii’
Rd warning: flirt_apply.Rd:40: missing link ‘readnii’
fnirt html
Rd warning: fnirt.Rd:29: missing link ‘readnii’
Rd warning: fnirt.Rd:37: missing link ‘readnii’
fnirt.help html
fnirt_with_affine html
Rd warning: fnirt_with_affine.Rd:36: missing link ‘readnii’
Rd warning: fnirt_with_affine.Rd:46: missing link ‘readnii’
fnirt_with_affine_apply html
Rd warning: fnirt_with_affine_apply.Rd:40: missing link ‘readnii’
Rd warning: fnirt_with_affine_apply.Rd:50: missing link ‘readnii’
fsl_anat html
Rd warning: fsl_anat.Rd:31: missing link ‘checkimg’
fsl_anat.help html
fsl_applywarp html
Rd warning: fsl_applywarp.Rd:32: missing link ‘readnii’
Rd warning: fsl_applywarp.Rd:40: missing link ‘readnii’
fsl_applywarp.help html
fsl_atlas_dir html
fsl_avscale html
fsl_biascorrect html
Rd warning: fsl_biascorrect.Rd:27: missing link ‘readnii’
Rd warning: fsl_biascorrect.Rd:37: missing link ‘readnii’
fsl_bin_tab html
fsl_cluster html
Rd warning: fsl_cluster.Rd:43: missing link ‘readnii’
fsl_data_dir html
fsl_deface html
Rd warning: fsl_deface.Rd:44: missing link ‘readnii’
fsl_dice html
fsl_resample html
Rd warning: fsl_resample.Rd:27: missing link ‘readnii’
fsl_smoothest html
fsl_std_dir html
fsl_tsplot html
fsl_version html
fslabs html
Rd warning: fslabs.Rd:21: missing link ‘readnii’
Rd warning: fslabs.Rd:31: missing link ‘readnii’
fslabs.help html
fslacos html
Rd warning: fslacos.Rd:21: missing link ‘readnii’
Rd warning: fslacos.Rd:31: missing link ‘readnii’
fslacos.help html
fsladd html
Rd warning: fsladd.Rd:22: missing link ‘readnii’
Rd warning: fsladd.Rd:34: missing link ‘readnii’
fsladd.help html
fsland html
fslasin html
Rd warning: fslasin.Rd:21: missing link ‘readnii’
Rd warning: fslasin.Rd:31: missing link ‘readnii’
fslasin.help html
fslatan html
Rd warning: fslatan.Rd:21: missing link ‘readnii’
Rd warning: fslatan.Rd:31: missing link ‘readnii’
fslatan.help html
fslbet html
Rd warning: fslbet.Rd:23: missing link ‘readnii’
Rd warning: fslbet.Rd:32: missing link ‘readnii’
fslbet.help html
fslbin html
Rd warning: fslbin.Rd:21: missing link ‘readnii’
Rd warning: fslbin.Rd:30: missing link ‘readnii’
fslbin.help html
fslbinv html
Rd warning: fslbinv.Rd:21: missing link ‘readnii’
Rd warning: fslbinv.Rd:31: missing link ‘readnii’
fslbinv.help html
fslchfiletype html
Rd warning: fslchfiletype.Rd:28: missing link ‘readnii’
Rd warning: fslchfiletype.Rd:34: missing link ‘readnii’
fslchfiletype.help html
fslcmd html
Rd warning: fslcmd.Rd:35: missing link ‘readnii’
Rd warning: fslcmd.Rd:57: missing link ‘readnii’
fslcog html
fslcos html
Rd warning: fslcos.Rd:21: missing link ‘readnii’
Rd warning: fslcos.Rd:31: missing link ‘readnii’
fslcos.help html
fslcpgeom html
Rd warning: fslcpgeom.Rd:26: missing link ‘readnii’
Rd warning: fslcpgeom.Rd:34: missing link ‘readnii’
fslcpgeom.help html
fsldilate html
Rd warning: fsldilate.Rd:23: missing link ‘readnii’
Rd warning: fsldilate.Rd:32: missing link ‘readnii’
fsldir html
fsldiv html
Rd warning: fsldiv.Rd:22: missing link ‘readnii’
Rd warning: fsldiv.Rd:34: missing link ‘readnii’
fsldiv.help html
fsledge html
Rd warning: fsledge.Rd:21: missing link ‘readnii’
Rd warning: fsledge.Rd:31: missing link ‘readnii’
fsledge.help html
fslentropy html
fslepi_reg html
Rd warning: fslepi_reg.Rd:44: missing link ‘readnii’
Rd warning: fslepi_reg.Rd:65: missing link ‘readnii’
fslerode html
Rd warning: fslerode.Rd:23: missing link ‘readnii’
Rd warning: fslerode.Rd:32: missing link ‘readnii’
fslerode.help html
fslexp html
Rd warning: fslexp.Rd:21: missing link ‘readnii’
Rd warning: fslexp.Rd:31: missing link ‘readnii’
fslexp.help html
fslfill html
Rd warning: fslfill.Rd:22: missing link ‘readnii’
Rd warning: fslfill.Rd:33: missing link ‘readnii’
fslfill.help html
fslfill2 html
Rd warning: fslfill2.Rd:34: missing link ‘readnii’
Rd warning: fslfill2.Rd:40: missing link ‘readnii’
fslhd html
Rd warning: fslhd.Rd:16: missing link ‘checkimg’
fslhd.help html
fslhd.parse html
fslhelp html
fslindex html
Rd warning: fslindex.Rd:21: missing link ‘readnii’
Rd warning: fslindex.Rd:31: missing link ‘readnii’
fslindex.help html
fsllog html
Rd warning: fsllog.Rd:21: missing link ‘readnii’
Rd warning: fsllog.Rd:31: missing link ‘readnii’
fsllog.help html
fslmask html
Rd warning: fslmask.Rd:23: missing link ‘readnii’
Rd warning: fslmask.Rd:34: missing link ‘readnii’
fslmask.help html
fslmaths html
Rd warning: fslmaths.Rd:22: missing link ‘readnii’
Rd warning: fslmaths.Rd:31: missing link ‘readnii’
fslmaths.help html
fslmean html
fslmerge html
Rd warning: fslmerge.Rd:22: missing link ‘readnii’
Rd warning: fslmerge.Rd:34: missing link ‘readnii’
fslmerge.help html
fslmin_max html
fslmul html
Rd warning: fslmul.Rd:22: missing link ‘readnii’
Rd warning: fslmul.Rd:34: missing link ‘readnii’
fslmul.help html
fslnan html
Rd warning: fslnan.Rd:21: missing link ‘readnii’
Rd warning: fslnan.Rd:31: missing link ‘readnii’
fslnan.help html
fslnanm html
Rd warning: fslnanm.Rd:21: missing link ‘readnii’
Rd warning: fslnanm.Rd:31: missing link ‘readnii’
fslnanm.help html
fslor html
Rd warning: fslor.Rd:31: missing link ‘readnii’
Rd warning: fslor.Rd:35: missing link ‘readnii’
fslorient html
Rd warning: fslorient.Rd:23: missing link ‘readnii’
Rd warning: fslorient.Rd:31: missing link ‘readnii’
fslorient.help html
fslorient_wrap html
fslorienter html
fslrand html
Rd warning: fslrand.Rd:21: missing link ‘readnii’
Rd warning: fslrand.Rd:31: missing link ‘readnii’
fslrand.help html
fslrandn html
Rd warning: fslrandn.Rd:21: missing link ‘readnii’
Rd warning: fslrandn.Rd:31: missing link ‘readnii’
fslrandn.help html
fslrange html
Rd warning: fslrange.Rd:19: missing link ‘checkimg’
fslrecip html
Rd warning: fslrecip.Rd:21: missing link ‘readnii’
Rd warning: fslrecip.Rd:31: missing link ‘readnii’
fslrecip.help html
fslrem html
Rd warning: fslrem.Rd:22: missing link ‘readnii’
Rd warning: fslrem.Rd:34: missing link ‘readnii’
fslrem.help html
fslreorient2std html
Rd warning: fslreorient2std.Rd:31: missing link ‘readnii’
Rd warning: fslreorient2std.Rd:39: missing link ‘readnii’
fslreorient2std.help html
fslrobustfov html
Rd warning: fslrobustfov.Rd:34: missing link ‘readnii’
Rd warning: fslrobustfov.Rd:40: missing link ‘readnii’
fslrobustfov.help html
fslroi html
Rd warning: fslroi.Rd:55: missing link ‘readnii’
Rd warning: fslroi.Rd:61: missing link ‘readnii’
fslsd html
fslsin html
Rd warning: fslsin.Rd:26: missing link ‘readnii’
Rd warning: fslsin.Rd:32: missing link ‘readnii’
fslsin.help html
fslslicetimer html
Rd warning: fslslicetimer.Rd:32: missing link ‘readnii’
Rd warning: fslslicetimer.Rd:48: missing link ‘readnii’
fslsmooth html
Rd warning: fslsmooth.Rd:25: missing link ‘readnii’
Rd warning: fslsmooth.Rd:46: missing link ‘readnii’
fslsmooth.help html
fslsmooth_in_mask html
fslsplit html
Rd warning: fslsplit.Rd:29: missing link ‘readnii’
fslsplit.help html
fslsqr html
Rd warning: fslsqr.Rd:21: missing link ‘readnii’
Rd warning: fslsqr.Rd:31: missing link ‘readnii’
fslsqr.help html
fslsqrt html
Rd warning: fslsqrt.Rd:21: missing link ‘readnii’
Rd warning: fslsqrt.Rd:31: missing link ‘readnii’
fslsqrt.help html
fslstats html
Rd warning: fslstats.Rd:19: missing link ‘checkimg’
fslstats.help html
fslsub html
Rd warning: fslsub.Rd:22: missing link ‘readnii’
Rd warning: fslsub.Rd:34: missing link ‘readnii’
fslsub.help html
fslsub2 html
Rd warning: fslsub2.Rd:21: missing link ‘readnii’
Rd warning: fslsub2.Rd:30: missing link ‘readnii’
fslsub2.help html
fslsum html
fslswapdim html
Rd warning: fslswapdim.Rd:24: missing link ‘readnii’
Rd warning: fslswapdim.Rd:33: missing link ‘readnii’
fslswapdim.help html
fsltan html
Rd warning: fsltan.Rd:21: missing link ‘readnii’
Rd warning: fsltan.Rd:31: missing link ‘readnii’
fsltan.help html
fslthresh html
Rd warning: fslthresh.Rd:24: missing link ‘readnii’
Rd warning: fslthresh.Rd:37: missing link ‘readnii’
fslthresh.help html
fslval html
Rd warning: fslval.Rd:16: missing link ‘checkimg’
fslval.help html
fslview html
Rd warning: fslview.Rd:21: missing link ‘checkimg’
fslview.help html
fslvol html
Rd warning: fslvol.Rd:19: missing link ‘voxdim’
fslvolume html
fslxor html
Rd warning: fslxor.Rd:31: missing link ‘readnii’
Rd warning: fslxor.Rd:35: missing link ‘readnii’
get.fsl html
get.fsloutput html
get.imgext html
getForms html
Rd warning: getForms.Rd:14: missing link ‘checkimg’
get_quickshear_mask html
have.fsl html
intent_code-methods html
intent_name-methods html
intent_p1-methods html
intent_p2-methods html
intent_p3-methods html
invert_xfm html
magic-methods html
mcflirt html
Rd warning: mcflirt.Rd:26: missing link ‘readnii’
Rd warning: mcflirt.Rd:35: missing link ‘readnii’
mcflirt.help html
melodic html
Rd warning: melodic.Rd:28: missing link ‘checkimg’
melodic.help html
mid_sagittal_align html
mni_fname html
mni_img html
Rd warning: mni_img.Rd:13: missing link ‘nifti’
mridefacer html
orientation-methods html
parse_avscale html
pixdim-methods html
probtrackx html
qform_code-methods html
read_xfm html
readrpi html
Rd warning: readrpi.Rd:17: missing link ‘readnii’
Rd warning: readrpi.Rd:12: missing link ‘readnii’
reverse_rpi_orient html
rpi_orient html
run_first_all html
run_first_all.help html
scl_inter-methods html
scl_slope-methods html
sform_code-methods html
sizeof_hdr-methods html
slice_code-methods html
slice_duration-methods html
slice_end-methods html
slice_start-methods html
susan html
Rd warning: susan.Rd:32: missing link ‘readnii’
susan.help html
toffset-methods html
topup html
vox_offset-methods html
xfibres html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fslr)