* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘fslr’ ...
** package ‘fslr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘fslr’
    finding HTML links ... done
    applytopup                              html  
    aux_file-methods                        html  
    bitpix-methods                          html  
    cal_max-methods                         html  
    cal_min-methods                         html  
    check_file                              html  
    finding level-2 HTML links ... done

    checkout                                html  
    data_type-methods                       html  
    datatype-methods                        html  
    descrip-methods                         html  
    dim_-methods                            html  
    download_fsl                            html  
    dtifit                                  html  
    eddy                                    html  
    eddy_correct                            html  
    enforce_form                            html  
    face_removal_mask                       html  
    fast                                    html  
    fast.help                               html  
    flirt                                   html  
    flirt.help                              html  
    flirt_apply                             html  
    fnirt                                   html  
    fnirt.help                              html  
    fnirt_with_affine                       html  
    fnirt_with_affine_apply                 html  
    fsl_anat                                html  
    fsl_anat.help                           html  
    fsl_applywarp                           html  
    fsl_applywarp.help                      html  
    fsl_atlas_dir                           html  
    fsl_avscale                             html  
    fsl_biascorrect                         html  
    fsl_bin_tab                             html  
    fsl_cluster                             html  
    fsl_data_dir                            html  
    fsl_deface                              html  
    fsl_dice                                html  
    fsl_resample                            html  
    fsl_smoothest                           html  
    fsl_std_dir                             html  
    fsl_tsplot                              html  
    fsl_version                             html  
    fslabs                                  html  
    fslabs.help                             html  
    fslacos                                 html  
    fslacos.help                            html  
    fsladd                                  html  
    fsladd.help                             html  
    fsland                                  html  
    fslasin                                 html  
    fslasin.help                            html  
    fslatan                                 html  
    fslatan.help                            html  
    fslbet                                  html  
    fslbet.help                             html  
    fslbin                                  html  
    fslbin.help                             html  
    fslbinv                                 html  
    fslbinv.help                            html  
    fslchfiletype                           html  
    fslchfiletype.help                      html  
    fslcmd                                  html  
    fslcog                                  html  
    fslcos                                  html  
    fslcos.help                             html  
    fslcpgeom                               html  
    fslcpgeom.help                          html  
    fsldilate                               html  
    fsldir                                  html  
    fsldiv                                  html  
    fsldiv.help                             html  
    fsledge                                 html  
    fsledge.help                            html  
    fslentropy                              html  
    fslepi_reg                              html  
    fslerode                                html  
    fslerode.help                           html  
    fslexp                                  html  
    fslexp.help                             html  
    fslfill                                 html  
    fslfill.help                            html  
    fslfill2                                html  
    fslhd                                   html  
    fslhd.help                              html  
    fslhd.parse                             html  
    fslhelp                                 html  
    fslindex                                html  
    fslindex.help                           html  
    fsllog                                  html  
    fsllog.help                             html  
    fslmask                                 html  
    fslmask.help                            html  
    fslmaths                                html  
    fslmaths.help                           html  
    fslmean                                 html  
    fslmerge                                html  
    fslmerge.help                           html  
    fslmin_max                              html  
    fslmul                                  html  
    fslmul.help                             html  
    fslnan                                  html  
    fslnan.help                             html  
    fslnanm                                 html  
    fslnanm.help                            html  
    fslor                                   html  
    fslorient                               html  
    fslorient.help                          html  
    fslorient_wrap                          html  
    fslorienter                             html  
    fslrand                                 html  
    fslrand.help                            html  
    fslrandn                                html  
    fslrandn.help                           html  
    fslrange                                html  
    fslrecip                                html  
    fslrecip.help                           html  
    fslrem                                  html  
    fslrem.help                             html  
    fslreorient2std                         html  
    fslreorient2std.help                    html  
    fslrobustfov                            html  
    fslrobustfov.help                       html  
    fslroi                                  html  
    fslsd                                   html  
    fslsin                                  html  
    fslsin.help                             html  
    fslslicetimer                           html  
    fslsmooth                               html  
    fslsmooth.help                          html  
    fslsmooth_in_mask                       html  
    fslsplit                                html  
    fslsplit.help                           html  
    fslsqr                                  html  
    fslsqr.help                             html  
    fslsqrt                                 html  
    fslsqrt.help                            html  
    fslstats                                html  
    fslstats.help                           html  
    fslsub                                  html  
    fslsub.help                             html  
    fslsub2                                 html  
    fslsub2.help                            html  
    fslsum                                  html  
    fslswapdim                              html  
    fslswapdim.help                         html  
    fsltan                                  html  
    fsltan.help                             html  
    fslthresh                               html  
    fslthresh.help                          html  
    fslval                                  html  
    fslval.help                             html  
    fslview                                 html  
    fslview.help                            html  
    fslvol                                  html  
    fslvolume                               html  
    fslxor                                  html  
    get.fsl                                 html  
    get.fsloutput                           html  
    get.imgext                              html  
    getForms                                html  
    get_quickshear_mask                     html  
    have.fsl                                html  
    intent_code-methods                     html  
    intent_name-methods                     html  
    intent_p1-methods                       html  
    intent_p2-methods                       html  
    intent_p3-methods                       html  
    invert_xfm                              html  
    magic-methods                           html  
    mcflirt                                 html  
    mcflirt.help                            html  
    melodic                                 html  
    melodic.help                            html  
    mid_sagittal_align                      html  
    mni_fname                               html  
    mni_img                                 html  
    mridefacer                              html  
    orientation-methods                     html  
    parse_avscale                           html  
    pixdim-methods                          html  
    probtrackx                              html  
    qform_code-methods                      html  
    read_xfm                                html  
    readrpi                                 html  
    reverse_rpi_orient                      html  
    rpi_orient                              html  
    run_first_all                           html  
    run_first_all.help                      html  
    scl_inter-methods                       html  
    scl_slope-methods                       html  
    sform_code-methods                      html  
    sizeof_hdr-methods                      html  
    slice_code-methods                      html  
    slice_duration-methods                  html  
    slice_end-methods                       html  
    slice_start-methods                     html  
    susan                                   html  
    susan.help                              html  
    toffset-methods                         html  
    topup                                   html  
    vox_offset-methods                      html  
    xfibres                                 html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fslr)