* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘fsbrain’ ...
** this is package ‘fsbrain’ version ‘1.0.0’
** package ‘fsbrain’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘fsbrain’
finding HTML links ... done
FSBRAIN_SCIMESH_DEFAULT_AA html
Triangles3D.to.coloredmesh html
agg.res.long.to.wide html
alphablend html
annot.outline html
annot.outline.border.vertices html
apply.affine.to.coords html
apply.label.to.morphdata html
apply.labeldata.to.morphdata html
apply.style.alpha html
apply.transform html
apply.transform.matrix html
apply.transform.to.tracts html
arrange.brainview.images html
arrange.brainview.images.grid html
as.tract.bundle.list html
bounding_sphere html
boxcoords.from.bbox html
brain html
brainview.sd html
brainview.si html
brainview.sr html
brainview.t4 html
brainview.t9 html
brainviews html
can.plot.colorbar html
can.plot.colorbar.from.coloredmeshes html
check.segment.points html
check.subjects.files html
check.subjectslist html
check.transform.matrix html
clip.data html
clip_fun html
cluster.shell.alpha html
cm.cbry html
cm.div html
cm.heat html
cm.qual html
cm.seq html
collayer.bg html
collayer.bg.atlas html
collayer.bg.meancurv html
collayer.bg.sulc html
collayer.from.annot html
collayer.from.annotdata html
collayer.from.mask.data html
collayer.from.morphlike.data html
collayers.merge html
color_to_rgba html
coloredmesh.from.annot html
coloredmesh.from.color html
coloredmesh.from.label html
coloredmesh.from.mask html
coloredmesh.from.morph.native html
coloredmesh.from.morph.standard html
coloredmesh.from.morphdata html
coloredmesh.from.preloaded.data html
coloredmesh.from.spheres html
coloredmesh.plot.colorbar.separate html
coloredmesh_to_scimesh html
coloredmeshes.combined.data.range html
coloredmeshes.from.color html
coloredmeshes.get.md html
coloredmeshes_to_scimesh html
coloredpaths.length html
coloredpaths_to_scimesh html
colorlist.brain.clusters html
colors.are.grayscale html
colors.have.transparency html
combine.colorbar.with.brainview.animation
html
combine.colorbar.with.brainview.image html
combine.colorbar.with.brainview.image.vertical
html
combine_bboxes html
common.makecmap.range html
compute.surface.contour.slices html
connectivity.matrix.from.edge.list html
constant.pervertexdata html
context.mesh.resolve.subjects.dir html
cube3D.tris html
cubes3D.tris html
deepcopylist.long html
deg2rad html
delete_all_optional_data html
demo html
demographics.to.fsgd.file html
demographics.to.qdec.table.dat html
desaturate html
download_fs_LR_32_atlases html
download_fs_LR_32_labels html
download_fs_LR_32_meshes html
download_fsaverage html
download_fsaverage3 html
download_fsaverage6 html
download_fsaverage_atlases html
download_fsaverage_minimal html
download_optional_data html
download_optional_paper_data html
download_xtract_tracts html
draw.colorbar html
draw.segments.on.image html
eeg_coords html
ensure.fs.surface html
ensure.tmesh3d html
export html
export.coloredmesh.ply html
extend_neighbors html
extract.volume.3D html
face.edges html
filter_scene_by_view html
find.freesurferhome html
find.subjectsdir.of html
flc html
force.to.range html
fs.coloredmesh html
fs.coloredpaths html
fs.home html
fs.surface.as.adjacencylist html
fs.surface.to.igraph html
fs.surface.to.tmesh3d html
fs.surface.vertex.neighbors html
fs.value.list.from.agg.res html
fsaverage.path html
fsbrain.renderable html
fsbrain.set.default.figsize html
fsbrain_style_to_scimesh_options html
fslong.subjects.detect html
fslong.subjects.finished html
fup html
gen.test.volume html
geod.patches.color.overlay html
geod.patches.color.overlay.singlehemi html
geod.patches.pervertexdata html
geod.patches.pervertexdata.singlehemi html
geod.vert.neighborhood html
geodesic.average.distance html
geodesic.ballstats html
geodesic.circles html
geodesic.dists.to.vertex html
geodesic.path html
get.atlas.region.names html
get.fsbrain.renderer.backend html
get.fsbrain.scimesh.aa.samples html
get.fsbrain.scimesh.output.dims html
get.rglstyle html
get.rglstyle.default html
get.rglstyle.edges html
get.rglstyle.glass html
get.rglstyle.glass2 html
get.rglstyle.parameters html
get.rglstyle.semitransparent html
get.rglstyle.shiny html
get.slice.indices html
get.subject.class html
get.view.angle.names html
getIn html
get_optional_data_filepath html
group.agg.atlas.native html
group.agg.atlas.standard html
group.annot html
group.concat.measures.native html
group.concat.measures.standard html
group.data.to.array html
group.label html
group.label.from.annot html
group.morph.agg.native html
group.morph.agg.standard html
group.morph.agg.standard.vertex html
group.morph.native html
group.morph.standard html
group.morph.standard.sf html
group.multimorph.agg.native html
group.multimorph.agg.standard html
group.start.rows html
group.surface html
groupmorph.split.hemilist html
handle.rglactions.highlight.points html
hasIn html
hemi.lobe.labels html
hemilist html
hemilist.derive.hemi html
hemilist.from.prefixed.list html
hemilist.get.combined.data html
hemilist.unwrap html
hemilist.wrap html
hemlist.ensure.contains html
hex_colors_to_rgba_matrix html
hex_to_rgba html
highlight.points.spheres html
highlight.vertices.on.subject html
highlight.vertices.on.subject.spheres html
highlight.vertices.spheres html
highlight_points_to_scimesh html
hull.retain.along.axis html
images.annotate html
images.dimmax html
images.rescale.to.max.canvas html
images.same.height html
images.same.width html
index2ras_tkr html
is.Triangles3D html
is.fs.coloredmesh html
is.fs.coloredpaths html
is.fs.coloredvoxels html
is.fsbrain html
is.hemilist html
label.border html
label.border.fast html
label.colFn html
label.colFn.inv html
label.from.annotdata html
label.to.annot html
labeldata.from.mask html
limit_fun html
limit_fun_na html
limit_fun_na_inside html
list.tract.bundle.files html
list_optional_data html
magick.grid html
mask.from.labeldata.for.hemi html
match.bundle.values html
mergehemi.annots html
mesh.atlas.all.regions.hidden html
mesh.atlas.check.files html
mesh.atlas.context.layer html
mesh.atlas.file.paths html
mesh.atlas.hide.nan.vertices html
mesh.atlas.resolve.subjects.dir html
mesh.atlas.restrict.faces html
mesh.ras2crs html
mesh.slice.intersection html
mesh.vertex.included.faces html
mesh.vertex.neighbors html
mesh.weld html
mkco.cluster html
mkco.div html
mkco.heat html
mkco.seq html
normalize html
normalize.region.names html
numverts.lh html
numverts.rh html
path.colors.from.orientation html
path.slopes html
per.hemi.vertex.indices html
perform.na.mapping html
perform.rglactions html
pervertexdata.smoothgaussian html
pervertexdata.smoothnn html
pervertexdata.smoothnn.compute.fwhm html
pervertexdata.smoothnn.compute.numiter
html
pp.named.list html
principal.curvatures html
print.fs.coloredmesh html
print.fs.coloredpaths html
print.fs.coloredvoxels html
print.fsbrain html
qc.for.group html
qc.from.regionwise.df html
qc.from.segstats.table html
qc.from.segstats.tables html
qc.fslong.checkidenticaldata html
qc.report.html html
qc.vis.failcount.by.region html
qdec.table.filter html
qdec.table.skeleton html
rad2deg html
ras2vox_tkr html
read.colorcsv html
read.md.demographics html
read.md.subjects html
read.md.subjects.from.fsgd html
read.tract.bundles html
recycle html
regions.to.ignore html
renderables_to_line_layers html
report.on.demographics html
resolve.template.subjects.dir html
rgl.coord.lines html
rglactions html
rglactions.has.key html
rglactions.transform html
rglo html
rglot html
rglvoxels html
rotation.matrix html
rotation.matrix.for.axis.rot html
safe.image.trim html
scale01 html
segment.orientation.colors html
segment_bbox html
shape.descriptor.names html
shape.descriptors html
shell.backend html
shell.coloredmeshes html
shell.cut.away html
shell.extract.mesh html
shell.levels html
shell.palette html
shell.volume.data html
shift.hemis.apart html
shift.hemis.rglactions html
sjd.demo html
sjld html
sortcoloredmeshes.by.hemi html
sph2fs html
spheres.mesh html
spread.values.over.annot html
spread.values.over.hemi html
spread.values.over.subject html
streamlines.to.segments html
streamlines.to.tracts html
subdivide.triangles html
subject.annot html
subject.annot.border html
subject.atlas.agg html
subject.descriptor.geodesic.average.distance
html
subject.dir.has.core.files html
subject.filepath.any html
subject.filepath.morph.native html
subject.filepath.morph.standard html
subject.label html
subject.label.from.annot html
subject.lobes html
subject.mask html
subject.morph.native html
subject.morph.standard html
subject.num.verts html
subject.region.centroids html
subject.report.html html
subject.surface html
subject.vol2surf html
subject.volume html
submesh.vertex html
surf.avg.vertexradius html
surf.center.fsaverage html
surf.metric.properties html
surf.radius.fsaverage html
surf.sphere.dist html
surf.sphere.gaussianweights html
surf.sphere.spatialfilter html
surface.curvatures html
surface.interpolate.frac html
surfs.props html
symmrange html
take.screenshot html
template.vol2surf html
test.numerical.meandiff html
test.numerical.meandiff.paired html
test.numerical.meandiff.unpaired html
tmesh3d.to.fs.surface html
track.length html
tract.bundle.name.from.file html
translation.matrix html
unit.icosphere html
values.to.colorlayer html
values.to.range html
vdata.split.by.hemi html
vertex.coords html
vertex.hemis html
view.angle.to.hemi.filter html
view_angle_to_scimesh_camera html
view_label3d html
vis.color.on.subject html
vis.coloredmesh html
vis.coloredmeshes html
vis.coloredmeshes.rotating html
vis.coloredpaths html
vis.colortable.legend html
vis.connectome html
vis.data.on.fsaverage html
vis.data.on.group.native html
vis.data.on.group.standard html
vis.data.on.subject html
vis.dti.trk html
vis.export.from.coloredmeshes html
vis.fs.surface html
vis.group.annot html
vis.group.coloredmeshes html
vis.group.morph.native html
vis.group.morph.standard html
vis.labeldata.on.subject html
vis.mask.on.subject html
vis.path.along.verts html
vis.paths html
vis.paths.along.verts html
vis.region.values.on.subject html
vis.renderable html
vis.rglwidget html
vis.rotated.coloredmeshes html
vis.seg.legend html
vis.subcortical.region.values html
vis.subject.annot html
vis.subject.label html
vis.subject.morph.native html
vis.subject.morph.standard html
vis.subject.pre html
vis.symmetric.data.on.subject html
vis.tracts html
vis.view html
vis.volume.clusters html
vis.volume.on.surface html
vislayout.from.coloredmeshes html
vol.apply.cortex.mask html
vol.boundary.box html
vol.boundary.box.apply html
vol.boundary.mask html
vol.check.interpolation html
vol.check.surface.frac html
vol.find.file html
vol.frac.vertices html
vol.hull html
vol.imagestack html
vol.intensity.to.color html
vol.load html
vol.mask.from.segmentation html
vol.merge html
vol.overlay.colors.from.activation html
vol.overlay.colors.from.colortable html
vol.plane.axes html
vol.planes html
vol.read.file.with.affine html
vol.sample.at.coords html
vol.sample.nearest html
vol.sample.trilinear html
vol.select.frame html
vol.slice html
vol.tkreg.affine html
vol.vol2surf.hemilist html
vol.vox.from.crs html
vol.warn.outside html
volume.boxblur html
volume.boxblur.axis html
volume.cluster.extremes html
volume.cluster.levels html
volume.cluster.threshold html
volume.clusters.colormap html
volume.subsample html
volume.subsample.matrix html
volvis.contour html
volvis.lb html
volvis.lb.with.surface html
volvis.lightbox html
volvis.shells html
volvis.slices.with.surface html
volvis.voxels html
vox2ras_tkr html
wrapped.image.append html
write.group.morph.standard html
write.group.morph.standard.mf html
write.group.morph.standard.sf html
write.group.morph.standard.singlehemi html
write.region.aggregated html
write.region.values html
write.region.values.fsaverage html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fsbrain)