* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘frailtySurv’ ...
** package ‘frailtySurv’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp0NrRbj/R.INSTALLf306c8fd691d/frailtySurv/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distributions.cpp -o distributions.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c estimators.cpp -o estimators.o
estimators.cpp: In function ‘Rcpp::NumericVector Ycal(Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::NumericVector)’:
estimators.cpp:861:7: warning: unused variable ‘k_tau’ [-Wunused-variable]
861 | int k_tau = n_timesteps - 1;
| ^~~~~
estimators.cpp: In function ‘Rcpp::List eta(Rcpp::List, Rcpp::List, Rcpp::List)’:
estimators.cpp:897:7: warning: unused variable ‘k_tau’ [-Wunused-variable]
897 | int k_tau = n_timesteps - 1;
| ^~~~~
estimators.cpp: In function ‘Rcpp::List Omega(Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::NumericVector, Rcpp::NumericVector)’:
estimators.cpp:982:10: warning: unused variable ‘integration’ [-Wunused-variable]
982 | double integration;
| ^~~~~~~~~~~
estimators.cpp: In function ‘Rcpp::NumericVector pi_r(Rcpp::List, Rcpp::List, Rcpp::NumericVector)’:
estimators.cpp:1052:7: warning: unused variable ‘k_tau’ [-Wunused-variable]
1052 | int k_tau = n_timesteps - 1;
| ^~~~~
estimators.cpp: In function ‘double G_rl(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::List)’:
estimators.cpp:1089:7: warning: unused variable ‘k_tau’ [-Wunused-variable]
1089 | int k_tau = n_timesteps - 1;
| ^~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hcubature.c -o hcubature.o
hcubature.c: In function ‘errMax’:
hcubature.c:123:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
123 | for (k = 0; k < fdim; ++k)
| ^~~
hcubature.c:125:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
125 | return errmax;
| ^~~~~~
hcubature.c: In function ‘rule75genzmalik_evalError’:
hcubature.c:572:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
572 | for (i = 0; i < dim; ++i)
| ^~~
hcubature.c:577:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
577 | R[iR].splitDim = dimDiffMax;
| ^
hcubature.c: In function ‘heap_push_many’:
hcubature.c:851:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
851 | for (i = 0; i < ni; ++i)
| ^~~
hcubature.c:853:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
853 | return SUCCESS;
| ^~~~~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o frailtySurv.so RcppExports.o distributions.o estimators.o hcubature.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp0NrRbj/R.INSTALLf306c8fd691d/frailtySurv/src'
make[1]: Entering directory '/tmp/Rtmp0NrRbj/R.INSTALLf306c8fd691d/frailtySurv/src'
make[1]: Leaving directory '/tmp/Rtmp0NrRbj/R.INSTALLf306c8fd691d/frailtySurv/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-frailtySurv/00new/frailtySurv/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘frailtySurv’
finding HTML links ... done
drs html
fitfrail html
fitfrail.control html
frailtySurv html
genfrail html
genfrail.control html
hdfail html
plot.fitfrail html
plot.simfrail html
simcoxph html
simfrail html
summary.fitfrail html
vcov.fitfrail html
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (frailtySurv)