* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘forestsearch’ ... ** this is package ‘forestsearch’ version ‘0.1.0’ ** package ‘forestsearch’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘forestsearch’ finding HTML links ... done CV_sgs html FS_labels html SG_tab_estimates html SGplot_estimates html acm.disjctif html add_id_column html add_unprocessed_vars html analyze_subgroup html apply_spline_constraint html assemble_results html assign_subgroup_membership html bootstrap_results html bootstrap_ystar html build_classification_table html build_cox_formula html build_estimation_table html calc_cov html calculate_counts html calculate_event_counts html calculate_hazard_ratios html calculate_linear_predictors html calculate_max_combinations html calculate_potential_hr html calculate_skewness html calibrate_cens_adjust html calibrate_k_inter html check_censoring_dgm html ci_est html compare_detection_curves html compare_multiple_survreg html compute_ahr html compute_cde html compute_detection_probability html compute_detection_probability_single html compute_dgm_cde html compute_node_metrics html compute_sg_hr html compute_sg_hr_estimates html compute_sg_summary html count_boot_id html cox_ahr_cde_analysis html cox_cs_fit html cox_summary html cox_summary_batch html cox_summary_vectorized html create_bootstrap_caption html create_bootstrap_diagnostic_plots html create_dgm_for_mrct html create_factor_summary_tables html create_forest_theme html create_fs_subgroup_indicators html create_gbsg_dgm html create_grf_config html create_null_result html create_reference_subgroup_columns html create_result_row html create_sample_size_table html create_spline_variables html create_subgroup_indicator html create_subgroup_summary_df html create_success_result html create_summary_table html create_summary_table_compact html create_summary_table_minimal html create_summary_table_presentation html create_summary_table_publication html create_timing_summary_table html cut_numeric html cut_size html cut_var html cv_compare_results html cv_metrics_tables html cv_summary_tables html cv_summary_text html default_fs_params html default_grf_params html default_grf_params_gen html default_sim_params html define_subgroups html density_threshold_both html density_threshold_integrand html detect_variable_types html dummy_encode html early_stop_decision html evaluate_combination_with_status html evaluate_comparison html evaluate_consistency_twostage html evaluate_cuts_once html evaluate_subgroup_consistency html extract_all_tree_cuts html extract_fs_estimates html extract_fs_subgroup_definition html extract_grf_estimates html extract_idx_flagredundancy html extract_selected_tree_cuts html extract_subgroup html extract_tree_cuts html figure_note html filter_by_lassokeep html filter_call_args html find_covariate_any_match html find_k_inter_for_target_hr html find_leaf_split html find_quantile_for_proportion html find_required_sample_size html fit_aft_model html fit_aft_model_spline html fit_aft_model_standard html fit_causal_forest html fit_cox_for_subgroup html fit_cox_models html fit_policy_trees html forestsearch-package html forestsearch html forestsearch_Kfold html forestsearch_KfoldOut html forestsearch_bootstrap_dofuture html forestsearch_tenfold html format_CI html format_bootstrap_diagnostics_table html format_bootstrap_table html format_bootstrap_timing_table html format_continuous_definition html format_fs_details html format_oc_results html format_results html format_search_results html format_subgroup_summary_tables html generate_aft_dgm_flex html generate_bootstrap_synthetic html generate_bootstrap_with_noise html generate_combination_indices html generate_complement_expression html generate_detection_curve html generate_gbsg_bootstrap_general html generate_readable_sg_labels html generate_super_population html get_Cox_sg html get_FSdata html get_best_survreg html get_bootstrap_exports html get_combinations_info html get_conf_force html get_covs_in html get_cut_name html get_dfRes html get_dfpred html get_dgm_hr html get_dgm_with_output html get_param html get_split_hr_fast html get_subgroup_membership html get_targetEst html gg_forest html grf.subg.eval html grf.subg.harm.survival html has_positive_variance html hrCI_format html interpret_estimation_table html is.continuous html is_flag_continuous html is_flag_drop html km_summary html lasso_selection html meets_event_criteria html meets_prevalence_threshold html mrct_region_sims html n_pcnt html parse_sg_harm_to_expression html plot.forestsearch html plot.fs_forestplot html plot.fs_sg_plot html plot_detection_curve html plot_km_band_forestsearch html plot_sg_distribution html plot_sg_forest html plot_sg_km html plot_sg_results html plot_sg_summary_panel html plot_sg_weighted_km html plot_spline_treatment_effect html plot_subgroup html plot_subgroup_effects html plot_subgroup_results_forestplot html prepare_censoring_model html prepare_search_data html prepare_subgroup_data html prepare_working_dataset html print.cox_ahr_cde html print.forestsearch html print.fs_forest_theme html print.fs_forestplot html print.fs_kfold html print.fs_sg_plot html print.fs_tenfold html print.fs_weighted_km html print.gbsg_dgm html print.multi_survreg_comparison html print_cv_params html print_grf_details html process_conf_force_expr html process_continuous_subgroup html process_continuous_vars html process_cutpoint html process_factor_subgroup html process_factor_vars html qhigh html qlow html quick_km_band_plot html remove_near_duplicate_subgroups html remove_redundant_subgroups html render_forestplot html render_reference_table html resolve_bootstrap_parallel_args html resolve_cv_parallel_args html rmst_calculation html run_forestsearch_analysis html run_grf_analysis html run_simulation_analysis html run_single_consistency_split html safe_eval_expr html safe_subset html save_forestplot html select_best_subgroup html sens_text html sensitivity_analysis_k_inter html setup_gbsg_dgm html setup_parallel_SGcons html sg_consistency_out html sg_tables html simulate_from_dgm html simulate_from_gbsg_dgm html sort_subgroups html sort_subgroups_preview html subgroup.consistency html subgroup.search html summarize_bootstrap_events html summarize_bootstrap_results html summarize_bootstrap_subgroups html summarize_factor_presence_robust html summarize_simulation_results html summarize_single_analysis html summary.cox_ahr_cde html summary.forestsearch html summaryout_mrct html validate_grf_data html validate_inputs html validate_k_inter_effect html validate_mrct_data html validate_spline_spec html wilson_ci html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (forestsearch)