- using R version 4.2.0 Patched (2022-05-15 r82368)
- using platform: x86_64-pc-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘forensim/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘forensim’ version ‘4.3’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘forensim’ can be installed ... OK
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [31s/35s] NOTE
A2.simu : twoAmodG: no visible global function definition for ‘par’
A2.simu : twoAmodG: no visible global function definition for ‘title’
A2.simu : twoAmodG: no visible global function definition for ‘points’
A2.simu : twoAmodG: no visible global function definition for ‘lines’
A2.simu : twoAmodG: no visible global function definition for ‘abline’
A2.simu : twoAmodG: no visible global function definition for ‘legend’
A2.simu : propFunction : save1: no visible global function definition
for ‘write.table’
A2.simu : filterFunction : saveHH: no visible global function
definition for ‘write.table’
A3.simu : threeAmodG: no visible global function definition for ‘par’
A3.simu : threeAmodG: no visible global function definition for ‘title’
A3.simu : threeAmodG: no visible global function definition for
‘points’
A3.simu : threeAmodG: no visible global function definition for ‘lines’
A3.simu : threeAmodG: no visible global function definition for
‘abline’
A3.simu : threeAmodG: no visible global function definition for
‘legend’
A3.simu : propFunction : save1: no visible global function definition
for ‘write.table’
A3.simu : filterFunction : saveHH: no visible global function
definition for ‘write.table’
A4.simu : fourAmodG: no visible global function definition for ‘par’
A4.simu : fourAmodG: no visible global function definition for ‘title’
A4.simu : fourAmodG: no visible global function definition for ‘points’
A4.simu : fourAmodG: no visible global function definition for ‘lines’
A4.simu : fourAmodG: no visible global function definition for ‘abline’
A4.simu : fourAmodG: no visible global function definition for ‘legend’
A4.simu : propFunction : save1: no visible global function definition
for ‘write.table’
A4.simu : filterFunction : saveHH: no visible global function
definition for ‘write.table’
Hbsimu : Hb.local: no visible global function definition for ‘rnorm’
Hbsimu : Hb.local: no visible global function definition for ‘na.omit’
Hbsimu : Hb.local : plotHb: no visible global function definition for
‘par’
Hbsimu : Hb.local : plotHb: no visible global function definition for
‘hist’
LRmixTK : verifAF: no visible global function definition for
‘read.table’
LRmixTK : verifAF: no visible global function definition for ‘read.csv’
LRmixTK : analyse : veriFile: no visible global function definition for
‘read.table’
LRmixTK : analyse : veriFile: no visible global function definition for
‘read.csv’
LRmixTK : analyse : sim.loc: no visible global function definition for
‘quantile’
LRmixTK : analyse : sim.loc: no visible global function definition for
‘write.table’
LRmixTK : analyse : sim.loc : Dplot.loc: no visible global function
definition for ‘par’
LRmixTK : analyse : sim.loc : Dplot.loc: no visible global function
definition for ‘ecdf’
LRmixTK : analyse : sim.loc : Dplot.loc: no visible global function
definition for ‘grid’
LRmixTK : analyse : analyse.loc : exportFile : functionMAJ: no visible
global function definition for ‘write.table’
LRmixTK : analyse : analyse.loc : exportFile2 : functionMAJ: no visible
global function definition for ‘write.table’
LRmixTK : analyse : analyse.loc : Dplot : locosimu : locosimu.loc: no
visible global function definition for ‘runif’
LRmixTK : analyse : analyse.loc : Dplot : locosimu: no visible global
function definition for ‘quantile’
LRmixTK : analyse : analyse.loc : Dplot : Dplot.loc: no visible global
function definition for ‘par’
LRmixTK : analyse : analyse.loc : Dplot : Dplot.loc: no visible global
function definition for ‘axis’
LRmixTK : analyse : analyse.loc : Dplot : Dplot.loc: no visible global
function definition for ‘arrows’
LRmixTK : analyse : analyse.loc : Dplot : Dplot.loc: no visible global
function definition for ‘grid’
LRmixTK : analyse : analyse.loc : Dplot : Dplot.loc: no visible global
function definition for ‘title’
LRmixTK : sampleProf : displayprofile: no visible global function
definition for ‘read.table’
LRmixTK : sampleProf : displayprofile: no visible global function
definition for ‘read.csv’
mastermix : <anonymous>: no visible global function definition for
‘help’
naomitab: no visible global function definition for ‘na.omit’
simMixSNP: no visible global function definition for ‘write.table’
simPCR2: no visible global function definition for ‘rbinom’
simPCR2TK : simPCR2TK.local : save : saveFile: no visible global
function definition for ‘write.table’
simPCR2TK : simPCR2TK.local : logis.frames : logi.regression: no
visible global function definition for ‘glm’
simPCR2TK : simPCR2TK.local : logis.frames : logi.regression: no
visible binding for global variable ‘binomial’
simPCR2TK : simPCR2TK.local : logis.frames : logi.regression : saveLog:
no visible global function definition for ‘write.table’
simPCR2TK : simPCR2TK.local : logis.frames : logi.regression :
plotglm0: no visible global function definition for ‘par’
simPCR2TK : simPCR2TK.local : logis.frames : logi.regression :
plotglm0: no visible global function definition for ‘predict’
simPCR2TK : simPCR2TK.local : logis.frames : logi.regression :
plotglm0: no visible global function definition for ‘residuals’
simPCR2TK : simPCR2TK.local : logis.frames : logi.regression :
plotglm0: no visible global function definition for ‘abline’
simPCR2TK : simPCR2TK.local : logis.frames : logi.regression :
plotglm0: no visible global function definition for ‘title’
simufreqD : rdirichlet: no visible global function definition for
‘rgamma’
simufreqD: no visible global function definition for ‘na.omit’
simupopD : rdirichlet: no visible global function definition for
‘rgamma’
simupopD: no visible global function definition for ‘na.omit’
wrapdataL: no visible global function definition for ‘read.table’
wrapdataL: no visible global function definition for ‘title’
Undefined global functions or variables:
abline arrows axis binomial ecdf glm grid help hist legend lines
na.omit par points predict quantile rbinom read.csv read.table
residuals rgamma rnorm runif title write.table
Consider adding
importFrom("graphics", "abline", "arrows", "axis", "grid", "hist",
"legend", "lines", "par", "points", "title")
importFrom("stats", "binomial", "ecdf", "glm", "na.omit", "predict",
"quantile", "rbinom", "residuals", "rgamma", "rnorm",
"runif")
importFrom("utils", "help", "read.csv", "read.table", "write.table")
to your NAMESPACE file.
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking examples ... [5s/5s] OK
- checking PDF version of manual ... OK
- checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
‘sim.txt’
- DONE
Status: 3 NOTEs