* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘flintyR’ ...
** package ‘flintyR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpAxhVaR/R.INSTALL15ec487e82adea/flintyR/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fast_dist_calc.cpp -o fast_dist_calc.o
fast_dist_calc.cpp: In function ‘arma::vec lp_distance(arma::mat, double)’:
fast_dist_calc.cpp:118:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
118 | for (i = 0; i < X.n_cols; i++) {
| ~~^~~~~~~~~~
fast_dist_calc.cpp:120:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
120 | for (j = i + 1; j < X.n_cols; j++) {
| ~~^~~~~~~~~~
fast_dist_calc.cpp:128:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
128 | for (i = 0; i < X.n_cols; i++) {
| ~~^~~~~~~~~~
fast_dist_calc.cpp:129:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
129 | for (j = i + 1; j < X.n_cols; j++) {
| ~~^~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o flintyR.so RcppExports.o fast_dist_calc.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpAxhVaR/R.INSTALL15ec487e82adea/flintyR/src'
make[1]: Entering directory '/tmp/RtmpAxhVaR/R.INSTALL15ec487e82adea/flintyR/src'
make[1]: Leaving directory '/tmp/RtmpAxhVaR/R.INSTALL15ec487e82adea/flintyR/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-flintyR/00new/flintyR/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘flintyR’
finding HTML links ... done
blockGaussian html
blockLargeP html
blockPermute html
buildForward html
buildReverse html
cacheBlockPermute1 html
cacheBlockPermute2 html
cachePermute html
distDataLargeP html
distDataPValue html
distDataPermute html
flintyR-package html
getBinVStat html
getBlockCov html
getChi2Weights html
getCov html
getHammingDistance html
getLpDistance html
getPValue html
getRealVStat html
hamming_bitwise html
indGaussian html
indLargeP html
lp_distance html
naiveBlockPermute1 html
naiveBlockPermute2 html
weightedChi2P html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flintyR)