* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘fitode’ ...
** this is package ‘fitode’ version ‘0.1.1’
** package ‘fitode’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘hessian’ in package ‘fitode’
Creating a new generic function for ‘jacobian’ in package ‘fitode’
** help
*** installing help indices
  converting help for package ‘fitode’
    finding HTML links ... done
    Eval-loglik.ode-method                  html  
    Eval                                    html  
    SierraLeone2014                         html  
    Transform-loglik.ode-method             html  
    Transform-odemodel-method               html  
    Transform-prior.ode-method              html  
    Transform                               html  
    apply_link                              html  
    blowfly                                 html  
    check_link                              html  
    coef-fitode-method                      html  
    coef-fitodeMCMC-method                  html  
    confint-fitode-method                   html  
    confint-fitodeMCMC-method               html  
    dfun                                    html  
    dfun2                                   html  
    fitode-class                            html  
Rd warning: fitode-class.Rd:37: missing link ‘mle2-class’
    fitode                                  html  
Rd warning: fitode.Rd:51: missing link ‘ode’
Rd warning: fitode.Rd:59: missing link ‘ginv’
Rd warning: fitode.Rd:77: missing link ‘mle2’
    fitodeMCMC-class                        html  
    fitodeMCMC                              html  
Rd warning: fitodeMCMC.Rd:56: missing link ‘ode’
    fixpar                                  html  
    grad-loglik.ode-method                  html  
    grad-odemodel-method                    html  
    grad                                    html  
    hessian                                 html  
    initialize-loglik.ode-method            html  
    initialize-odemodel-method              html  
    initialize-prior.ode-method             html  
    initialize-solution.ode-method          html  
    jacobian-odemodel-method                html  
    jacobian                                html  
    logLik-fitode-method                    html  
    logLik.sensitivity                      html  
Rd warning: logLik.sensitivity.Rd:24: missing link ‘ode’
    loglik.ode-class                        html  
    make_prior                              html  
    ode.sensitivity                         html  
Rd warning: ode.sensitivity.Rd:22: missing link ‘ode’
    ode.solve                               html  
    odemodel-class                          html  
    plot-fitode-missing-method              html  
    plot-fitodeMCMC-missing-method          html  
    plot_internal                           html  
    predict-fitode-method                   html  
    predict-fitodeMCMC-method               html  
    prior.ode-class                         html  
    profile-fitode-method                   html  
    select_model                            html  
    select_prior                            html  
    set_link                                html  
    show-fitode-method                      html  
    show-fitodeMCMC-method                  html  
    show-odemodel-method                    html  
    simulate-fitode-method                  html  
    simulate-odemodel-method                html  
    simulate_internal                       html  
    solution.de-class                       html  
    stdEr-fitode-method                     html  
    stdEr-fitodeMCMC-method                 html  
    summary-fitode-method                   html  
    summary-fitodeMCMC-method               html  
Rd warning: summary-fitodeMCMC-method.Rd:21: missing link ‘effectiveSize’
Rd warning: summary-fitodeMCMC-method.Rd:21: missing link ‘gelman.diag’
    tumorgrowth                             html  
    update-fitode-method                    html  
    update-fitodeMCMC-method                html  
    vcov-fitode-method                      html  
    vcov-fitodeMCMC-method                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fitode)