* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘event’ ...
** package ‘event’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpPXoT1F/R.INSTALL216dd13f0c673c/event/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c event_init.c -o event_init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ksurvb.c -o ksurvb.o
ksurvb.c: In function ‘ksurvb’:
ksurvb.c:213:18: warning: ‘omega’ may be used uninitialized [-Wmaybe-uninitialized]
213 | case 7: a=omega*a1; break;
| ~^~~~~~~~~
ksurvb.c:51:33: note: ‘omega’ was declared here
51 | double a,a1,b,b1,delta,lambda,omega,om,beta,bt,h,yy,tmp,ly,plap,intercept,
| ^~~~~
ksurvb.c:181:41: warning: ‘family’ may be used uninitialized [-Wmaybe-uninitialized]
181 | if(*pfamily)*like-=(c>0)*(family-c)*log(b1)-a*(pow(b1,family)-pow(b,family))/family;
| ~~~~~~~^~~
ksurvb.c:52:5: note: ‘family’ was declared here
52 | family;
| ^~~~~~
ksurvb.c:158:84: warning: ‘intercept’ may be used uninitialized [-Wmaybe-uninitialized]
158 | h=-yy/lambda+(1/(lambda*bt)+1)*log((lambda+intercept)/(lambda+intercept*exp(-bt*yy)));
| ~~~~~~~~~^~~~~~~~~~~~
ksurvb.c:51:67: note: ‘intercept’ was declared here
51 | double a,a1,b,b1,delta,lambda,omega,om,beta,bt,h,yy,tmp,ly,plap,intercept,
| ^~~~~~~~~
ksurvb.c:98:20: warning: ‘Rf_beta’ may be used uninitialized [-Wmaybe-uninitialized]
98 | else bt+=beta;}
In file included from ksurvb.c:43:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rmath.h:210:25: note: ‘Rf_beta’ was declared here
210 | #define beta Rf_beta
| ^~~~~~~
ksurvb.c:51:42: note: in expansion of macro ‘beta’
51 | double a,a1,b,b1,delta,lambda,omega,om,beta,bt,h,yy,tmp,ly,plap,intercept,
| ^~~~
ksurvb.c:173:17: warning: ‘lambda’ may be used uninitialized [-Wmaybe-uninitialized]
173 | tmp=exp(-fabs(ly-bt)/lambda)/2;
| ^~~~~~~~~~~~~~~~~~~~~~~~
ksurvb.c:51:26: note: ‘lambda’ was declared here
51 | double a,a1,b,b1,delta,lambda,omega,om,beta,bt,h,yy,tmp,ly,plap,intercept,
| ^~~~~~
ksurvb.c:174:26: warning: ‘ly’ may be used uninitialized [-Wmaybe-uninitialized]
174 | b1+=ly<bt?tmp:1-tmp;
| ~~~~~~~~~^~~~~~
ksurvb.c:51:59: note: ‘ly’ was declared here
51 | double a,a1,b,b1,delta,lambda,omega,om,beta,bt,h,yy,tmp,ly,plap,intercept,
| ^~
ksurvb.c:174:26: warning: ‘bt’ may be used uninitialized [-Wmaybe-uninitialized]
174 | b1+=ly<bt?tmp:1-tmp;
| ~~~~~~~~~^~~~~~
ksurvb.c:51:47: note: ‘bt’ was declared here
51 | double a,a1,b,b1,delta,lambda,omega,om,beta,bt,h,yy,tmp,ly,plap,intercept,
| ^~
ksurvb.c:178:71: warning: ‘h’ may be used uninitialized [-Wmaybe-uninitialized]
178 | *like-=(c>1?lgammafn(a1)-lgammafn(a)-lgammafn(c+1):c*log(a))+c*h;
| ~^~
ksurvb.c:51:50: note: ‘h’ was declared here
51 | double a,a1,b,b1,delta,lambda,omega,om,beta,bt,h,yy,tmp,ly,plap,intercept,
| ^
ksurvb.c:217:21: warning: ‘om’ may be used uninitialized [-Wmaybe-uninitialized]
217 | case 2: b=om*b1+(1-om)*delta; break;
| ~~^~~
ksurvb.c:51:39: note: ‘om’ was declared here
51 | double a,a1,b,b1,delta,lambda,omega,om,beta,bt,h,yy,tmp,ly,plap,intercept,
| ^~
ksurvb.c: In function ‘frailb’:
ksurvb.c:340:68: warning: ‘intercept’ may be used uninitialized [-Wmaybe-uninitialized]
340 | l1+=-yy/lambda+log((lambda+intercept)/(lambda+intercept*exp(-bt*yy)))/((lambda*bt)+1);
| ~~~~~~~~~^~~~~~~~~~~~
ksurvb.c:233:55: note: ‘intercept’ was declared here
233 | double b1,delta,lambda,beta,bt,l1,yy,nb,ly,plap,tmp,intercept,H,btp,res;
| ^~~~~~~~~
ksurvb.c:257:9: warning: ‘Rf_beta’ may be used uninitialized [-Wmaybe-uninitialized]
257 | nb/=beta;}
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rmath.h:210:25: note: ‘Rf_beta’ was declared here
210 | #define beta Rf_beta
| ^~~~~~~
ksurvb.c:233:26: note: in expansion of macro ‘beta’
233 | double b1,delta,lambda,beta,bt,l1,yy,nb,ly,plap,tmp,intercept,H,btp,res;
| ^~~~
ksurvb.c:355:17: warning: ‘lambda’ may be used uninitialized [-Wmaybe-uninitialized]
355 | tmp=exp(-fabs(ly-bt)/lambda)/2;
| ^~~~~~~~~~~~~~~~~~~~~~~~
ksurvb.c:233:19: note: ‘lambda’ was declared here
233 | double b1,delta,lambda,beta,bt,l1,yy,nb,ly,plap,tmp,intercept,H,btp,res;
| ^~~~~~
ksurvb.c:266:25: warning: ‘yy’ may be used uninitialized [-Wmaybe-uninitialized]
266 | if(*model>=5)ly=log(yy);
| ^~~~~~~
ksurvb.c:233:37: note: ‘yy’ was declared here
233 | double b1,delta,lambda,beta,bt,l1,yy,nb,ly,plap,tmp,intercept,H,btp,res;
| ^~
ksurvb.c:356:24: warning: ‘ly’ may be used uninitialized [-Wmaybe-uninitialized]
356 | H=ly<bt?tmp:1-tmp;
| ~~~~~~~~~^~~~~~
ksurvb.c:233:43: note: ‘ly’ was declared here
233 | double b1,delta,lambda,beta,bt,l1,yy,nb,ly,plap,tmp,intercept,H,btp,res;
| ^~
ksurvb.c:284:20: warning: ‘bt’ may be used uninitialized [-Wmaybe-uninitialized]
284 | bt=exp(log(bt)+exp(p[*nccov+*birth+*tvc+2]*y[nm])*res);
| ^~~~~~~
ksurvb.c:233:31: note: ‘bt’ was declared here
233 | double b1,delta,lambda,beta,bt,l1,yy,nb,ly,plap,tmp,intercept,H,btp,res;
| ^~
ksurvb.c:390:11: warning: ‘H’ may be used uninitialized [-Wmaybe-uninitialized]
390 | b1+=H;
| ~~^~~
ksurvb.c:233:65: note: ‘H’ was declared here
233 | double b1,delta,lambda,beta,bt,l1,yy,nb,ly,plap,tmp,intercept,H,btp,res;
| ^
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ksurvg.c -o ksurvg.o
ksurvg.c: In function ‘ksurvg’:
ksurvg.c:209:18: warning: ‘omega’ may be used uninitialized [-Wmaybe-uninitialized]
209 | case 7: a=omega*a1; break;
| ~^~~~~~~~~
ksurvg.c:46:32: note: ‘omega’ was declared here
46 | double a,a1,b,H,delta,lambda,omega,om,beta,bt,l1,yy,ly,plap,tmp,
| ^~~~~
ksurvg.c:148:72: warning: ‘intercept’ may be used uninitialized [-Wmaybe-uninitialized]
148 | l1=exp(-yy/lambda)*pow((lambda+intercept)/(lambda+intercept*exp(-bt*yy)),1/(lambda*bt)+1);
| ~~~~~~~~~^~~~~~~~~~~~
ksurvg.c:47:5: note: ‘intercept’ was declared here
47 | intercept;
| ^~~~~~~~~
ksurvg.c:88:20: warning: ‘Rf_beta’ may be used uninitialized [-Wmaybe-uninitialized]
88 | else bt+=beta;}
In file included from ksurvg.c:38:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/Rmath.h:210:25: note: ‘Rf_beta’ was declared here
210 | #define beta Rf_beta
| ^~~~~~~
ksurvg.c:46:41: note: in expansion of macro ‘beta’
46 | double a,a1,b,H,delta,lambda,omega,om,beta,bt,l1,yy,ly,plap,tmp,
| ^~~~
ksurvg.c:163:17: warning: ‘lambda’ may be used uninitialized [-Wmaybe-uninitialized]
163 | tmp=exp(-fabs(ly-bt)/lambda)/2;
| ^~~~~~~~~~~~~~~~~~~~~~~~
ksurvg.c:46:25: note: ‘lambda’ was declared here
46 | double a,a1,b,H,delta,lambda,omega,om,beta,bt,l1,yy,ly,plap,tmp,
| ^~~~~~
ksurvg.c:164:24: warning: ‘ly’ may be used uninitialized [-Wmaybe-uninitialized]
164 | H=ly<bt?tmp:1-tmp;
| ~~~~~~~~~^~~~~~
ksurvg.c:46:55: note: ‘ly’ was declared here
46 | double a,a1,b,H,delta,lambda,omega,om,beta,bt,l1,yy,ly,plap,tmp,
| ^~
ksurvg.c:164:24: warning: ‘bt’ may be used uninitialized [-Wmaybe-uninitialized]
164 | H=ly<bt?tmp:1-tmp;
| ~~~~~~~~~^~~~~~
ksurvg.c:46:46: note: ‘bt’ was declared here
46 | double a,a1,b,H,delta,lambda,omega,om,beta,bt,l1,yy,ly,plap,tmp,
| ^~
ksurvg.c:169:11: warning: ‘H’ may be used uninitialized [-Wmaybe-uninitialized]
169 | if(H<1e-20)H=1e-20;
| ^
ksurvg.c:46:17: note: ‘H’ was declared here
46 | double a,a1,b,H,delta,lambda,omega,om,beta,bt,l1,yy,ly,plap,tmp,
| ^
ksurvg.c:168:11: warning: ‘l1’ may be used uninitialized [-Wmaybe-uninitialized]
168 | if(l1<1e-20)l1=1e-20;
| ^
ksurvg.c:46:49: note: ‘l1’ was declared here
46 | double a,a1,b,H,delta,lambda,omega,om,beta,bt,l1,yy,ly,plap,tmp,
| ^~
ksurvg.c:213:19: warning: ‘om’ may be used uninitialized [-Wmaybe-uninitialized]
213 | case 2: b=pow(H,-om)*delta; break;
| ^~~~~~~~~~
ksurvg.c:46:38: note: ‘om’ was declared here
46 | double a,a1,b,H,delta,lambda,omega,om,beta,bt,l1,yy,ly,plap,tmp,
| ^~
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o event.so event_init.o ksurvb.o ksurvg.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpPXoT1F/R.INSTALL216dd13f0c673c/event/src'
make[1]: Entering directory '/tmp/RtmpPXoT1F/R.INSTALL216dd13f0c673c/event/src'
make[1]: Leaving directory '/tmp/RtmpPXoT1F/R.INSTALL216dd13f0c673c/event/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-event/00new/event/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘event’
finding HTML links ... done
autointensity html
bp html
coxre html
cprocess html
ehr html
event html
hboxcox html
hburr html
hcauchy html
hexp html
hgamma html
hgextval html
hggamma html
hglogis html
hgweibull html
hhjorth html
hinvgauss html
hlaplace html
hlnorm html
hlogis html
hnorm html
hpareto html
hskewlaplace html
hstudent html
hweibull html
ident html
kalsurv html
km html
pbirth html
plot.intensity html
pp html
tccov html
tpast html
ttime html
tvcov html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (event)