* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘epiworldR’ ... ** package ‘epiworldR’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++-13 -std=gnu++17 accepts -g... yes checking for g++-13 -std=gnu++17 option to enable C++11 features... none needed checking how to run the C++ preprocessor... g++-13 -std=gnu++17 -E checking whether the compiler supports GNU C++... (cached) yes checking whether g++-13 -std=gnu++17 accepts -g... (cached) yes checking for g++-13 -std=gnu++17 option to enable C++11 features... (cached) none needed checking whether we have a suitable tempdir... /tmp checking whether R CMD SHLIB can already compile programs using OpenMP... yes checking whether to build the dev version... configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/epiworldR-package.R ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-24) 13.2.0’ make[1]: Entering directory '/tmp/RtmpecoAbx/R.INSTALL1da51736c2e2de/epiworldR/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -fpic -g -O2 -Wall -pedantic -mtune=native -c actions.cpp -o actions.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -fpic -g -O2 -Wall -pedantic -mtune=native -c agents.cpp -o agents.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -fpic -g -O2 -Wall -pedantic -mtune=native -c db.cpp -o db.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -fpic -g -O2 -Wall -pedantic -mtune=native -c epimodels.cpp -o epimodels.o In file included from ../inst/include/epiworld/epiworld.hpp:31, from epiworld-common.h:4, from epimodels.cpp:5: In member function ‘epiworld::UserData<int>& epiworld::UserData<int>::operator=(epiworld::UserData<int>&&)’, inlined from ‘void epiworld::DataBase<TSeq>::set_user_data(std::vector<std::__cxx11::basic_string<char> >) [with TSeq = int]’ at ../inst/include/epiworld/database-meat.hpp:1049:15, inlined from ‘void epiworld::Model<TSeq>::set_user_data(std::vector<std::__cxx11::basic_string<char> >) [with TSeq = int]’ at ../inst/include/epiworld/model-meat.hpp:2391:21, inlined from ‘epiworld::epimodels::ModelSURV<TSeq>::ModelSURV(epiworld::epimodels::ModelSURV<TSeq>&, std::string, long long unsigned int, float, float, float, float, float, float, float, float, float, float, float) [with TSeq = int]’ at ../inst/include/epiworld/models/surveillance.hpp:335:24: ../inst/include/epiworld/userdata-bones.hpp:16:7: warning: ‘<anonymous>.epiworld::UserData<int>::model’ may be used uninitialized [-Wmaybe-uninitialized] 16 | class UserData | ^~~~~~~~ In file included from ../inst/include/epiworld/epiworld.hpp:37: ../inst/include/epiworld/database-meat.hpp: In constructor ‘epiworld::epimodels::ModelSURV<TSeq>::ModelSURV(epiworld::epimodels::ModelSURV<TSeq>&, std::string, long long unsigned int, float, float, float, float, float, float, float, float, float, float, float) [with TSeq = int]’: ../inst/include/epiworld/database-meat.hpp:1049:17: note: ‘<anonymous>’ declared here 1049 | user_data = UserData<TSeq>(names); | ^~~~~~~~~~~~~~~~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -fpic -g -O2 -Wall -pedantic -mtune=native -c model.cpp -o model.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -fpic -g -O2 -Wall -pedantic -mtune=native -c tool.cpp -o tool.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -Dprintf_epiworld=Rprintf -fpic -g -O2 -Wall -pedantic -mtune=native -c virus.cpp -o virus.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o epiworldR.so actions.o agents.o cpp11.o db.o epimodels.o model.o tool.o virus.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/tmp/RtmpecoAbx/R.INSTALL1da51736c2e2de/epiworldR/src' make[1]: Entering directory '/tmp/RtmpecoAbx/R.INSTALL1da51736c2e2de/epiworldR/src' make[1]: Leaving directory '/tmp/RtmpecoAbx/R.INSTALL1da51736c2e2de/epiworldR/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-epiworldR/00new/epiworldR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘epiworldR’ finding HTML links ... done ModelDiffNet html ModelSEIR html ModelSEIRCONN html ModelSEIRD html ModelSEIRDCONN html ModelSIR html ModelSIRCONN html ModelSIRD html ModelSIRDCONN html ModelSIRLogit html ModelSIS html ModelSISD html ModelSURV html agents_smallworld html epiworld-data html epiworld-methods html epiworldR-deprecated html epiworldR-package html get_agents html global-actions html run_multiple html tool html virus html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * creating tarball packaged installation of ‘epiworldR’ as ‘epiworldR_0.1-0_R_x86_64-pc-linux-gnu.tar.gz’ * DONE (epiworldR)