* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘epitraxr’ ...
** this is package ‘epitraxr’ version ‘0.5.0’
** package ‘epitraxr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘epitraxr’
    finding HTML links ... done
    clear_old_reports                       html  
    compute_trend                           html  
    convert_counts_to_rate                  html  
    create_epitrax_from_file                html  
    create_filesystem                       html  
    create_public_report_combined_month_ytd
                                            html  
    create_public_report_month              html  
    create_public_report_ytd                html  
    create_report_annual_counts             html  
    create_report_grouped_stats             html  
    create_report_monthly_avgs              html  
    create_report_monthly_counts            html  
    create_report_monthly_medians           html  
    create_report_ytd_counts                html  
    create_report_ytd_medians               html  
    epitrax_ireport_annual_counts           html  
    epitrax_ireport_monthly_avgs            html  
    epitrax_ireport_monthly_counts_all_yrs
                                            html  
    epitrax_ireport_ytd_counts_for_month    html  
    epitrax_preport_combined_month_ytd      html  
    epitrax_preport_month_crosssections     html  
    epitrax_preport_ytd_rates               html  
    epitrax_report_grouped_stats            html  
    epitrax_report_monthly_medians          html  
    epitrax_report_ytd_medians              html  
    epitrax_set_config_from_file            html  
    epitrax_set_config_from_list            html  
    epitrax_set_report_diseases             html  
    epitrax_write_csvs                      html  
    epitrax_write_pdf_grouped_stats         html  
    epitrax_write_pdf_public_reports        html  
    epitrax_write_xlsxs                     html  
    epitraxr_config                         html  
    format_epitrax_data                     html  
    get_month_counts                        html  
    get_report_config                       html  
    get_report_diseases                     html  
    get_report_diseases_internal            html  
    get_report_diseases_public              html  
    get_yrs                                 html  
    mmwr_week_to_month                      html  
    read_epitrax_data                       html  
    reshape_annual_wide                     html  
    reshape_monthly_wide                    html  
    run_app                                 html  
    set_na_0                                html  
    setup_epitrax                           html  
    setup_filesystem                        html  
    standardize_report_diseases             html  
    validate_config                         html  
    validate_data                           html  
    validate_epitrax                        html  
    validate_filesystem                     html  
    write_report_csv                        html  
    write_report_pdf                        html  
    write_report_pdf_grouped                html  
    write_report_xlsx                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (epitraxr)