* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘epiphy’ ...
** this is package ‘epiphy’ version ‘0.5.0’
** package ‘epiphy’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFyXl6L/R.INSTALL1106aba22e5e4/epiphy/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mapcomp.cpp -o mapcomp.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sadie.cpp -o sadie.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o epiphy.so RcppExports.o mapcomp.o sadie.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFyXl6L/R.INSTALL1106aba22e5e4/epiphy/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFyXl6L/R.INSTALL1106aba22e5e4/epiphy/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFyXl6L/R.INSTALL1106aba22e5e4/epiphy/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-epiphy/00new/epiphy/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘epiphy’
finding HTML links ... done
BetaBinomial html
a2a html
agg_index html
aphids html
arthropods html
as.data.frame.intensity html
calpha.test html
chisq.test html
citrus_ctv html
clump html
codling_moths html
coef.smle html
dogwood_anthracnose html
epiphy html
fit_two_distr html
hop_viruses html
indAndSub html
intensity html
is.intensity html
link html
logLik.smle html
mapcomp html
mapped_var html
mapping html
offspring_survival html
onion_bacterial_blight html
power_law html
pyrethrum_ray_blight html
sadie html
simulated_epidemics html
smle html
smle_wrappers html
spatial_hier html
split.intensity html
threshold html
tobacco_viruses html
tomato_tswv html
vcov.smle html
z.test html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (epiphy)