* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘epicR’ ... ** this is package ‘epicR’ version ‘1.0.0’ ** package ‘epicR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.3.0-12) 14.3.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpviLwtv/R.INSTALL1a094016d4b123/epicR/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c model.cpp -o model.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c model_events.cpp -o model_events.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c model_globals.cpp -o model_globals.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c model_input.cpp -o model_input.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c model_output.cpp -o model_output.o model_output.cpp: In function ‘void update_output_ex(agent*)’: model_output.cpp:176:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 176 | else | ^~~~ model_output.cpp:183:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 183 | output_ex.cumul_cost_ctime[time]+=(*ag).cumul_cost; | ^~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c model_random.cpp -o model_random.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o epicR.so RcppExports.o model.o model_events.o model_globals.o model_input.o model_output.o model_random.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -Wl,-S -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpviLwtv/R.INSTALL1a094016d4b123/epicR/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpviLwtv/R.INSTALL1a094016d4b123/epicR/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpviLwtv/R.INSTALL1a094016d4b123/epicR/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-epicR/00new/epicR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘epicR’ finding HTML links ... done calc_event_stack_size html calibrate_COPD_inc html calibrate_explicit_mortality html calibrate_explicit_mortality2 html calibrate_smoking html copy_configs_to_user html epicR-config html epicR-package html estimate_memory_required html export_figures html express_matrix html get_agent_events html get_agent_size_bytes html get_all_events html get_all_events_matrix html get_available_memory html get_default_model_input html get_default_settings html get_errors html get_event html get_events_by_type html get_input html get_inputs html get_list_elements html get_n_events html get_output html get_output_ex html get_progress html get_runtime_stats html get_sample_output html get_settings html get_smith html get_user_config_dir html init_session html list_available_jurisdictions html mvrnormArma html report_COPD_by_ctime html report_exacerbation_by_time html reset_model_input html reset_user_configs html resume html sanity_COPD html sanity_check html set_input_var html set_settings_var html simulate html terminate_session html test_case_detection html user_config_exists html validate_COPD html validate_config html validate_diagnosis html validate_exacerbation html validate_gpvisits html validate_lung_function html validate_medication html validate_mortality html validate_overdiagnosis html validate_payoffs html validate_population html validate_smoking html validate_survival html validate_symptoms html validate_treatment html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (epicR)