* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘eha’ ...
** package ‘eha’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp5JLQI5/R.INSTALL7d2f757bd9394/eha/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c aftexpreg.c -o aftexpreg.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c aftreg.c -o aftreg.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c aftregGomp.c -o aftregGomp.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c c2f.c -o c2f.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c chek.f -o chek.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c cleanup.f -o cleanup.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coxfun.c -o coxfun.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coxfun2.c -o coxfun2.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eha_fun.c -o eha_fun.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eha_zeroin.c -o eha_zeroin.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c expnr.f -o expnr.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c expreg.c -o expreg.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c frail_ml.c -o frail_ml.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c geomsup.f -o geomsup.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c getHaz.f -o getHaz.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c getsums.f -o getsums.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c getsums.null.f -o getsums.null.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c ghq.f -o ghq.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c gmlfun.f -o gmlfun.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c hazards.f -o hazards.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c loglik_ph.c -o loglik_ph.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c loglik_phexp.c -o loglik_phexp.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c martres.f -o martres.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phexpreg.c -o phexpreg.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phfun.c -o phfun.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phreg.c -o phreg.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c risk.c -o risk.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sizes.c -o sizes.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c split.f -o split.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sup.c -o sup.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c weibnr.f -o weibnr.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weibreg.c -o weibreg.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c wfunc.f -o wfunc.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c wfunc.null.f -o wfunc.null.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o eha.so aftexpreg.o aftreg.o aftregGomp.o c2f.o chek.o cleanup.o coxfun.o coxfun2.o eha_fun.o eha_zeroin.o expnr.o expreg.o frail_ml.o geomsup.o getHaz.o getsums.o getsums.null.o ghq.o gmlfun.o hazards.o init.o loglik_ph.o loglik_phexp.o martres.o phexpreg.o phfun.o phreg.o risk.o sizes.o split.o sup.o weibnr.o weibreg.o wfunc.o wfunc.null.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp5JLQI5/R.INSTALL7d2f757bd9394/eha/src'
make[1]: Entering directory '/tmp/Rtmp5JLQI5/R.INSTALL7d2f757bd9394/eha/src'
make[1]: Leaving directory '/tmp/Rtmp5JLQI5/R.INSTALL7d2f757bd9394/eha/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-eha/00new/eha/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘eha’
finding HTML links ... done
EV html
Gompertz html
HiscoHisclass html
Loglogistic html
Lognormal html
Pch html
SurvSplit html
Weibull html
aftreg html
aftreg.fit html
age.window html
cal.window html
check.dist html
check.surv html
child html
compHaz html
coxfunk html
coxreg html
coxreg.fit html
coxreg2 html
cro html
eha-package html
fert html
frail.fit html
geome.fit html
hazards html
import_Surv html
import_strata html
infants html
join.spells html
logrank html
logrye html
ltx html
ltx2 html
make.communal html
makeham html
male.mortality html
mlreg html
mort html
oe html
oldmort html
pchreg html
perstat html
phfunc html
phreg html
phreg.fit html
piecewise html
plot.aftreg html
plot.coxreg html
plot.hazdata html
plot.logrank html
plot.phreg html
plot.tpchreg html
plot.weibreg html
plotHaz html
print.aftreg html
print.coxreg html
print.logrank html
print.phreg html
print.risksets html
print.summary.aftreg html
print.summary.coxreg html
print.summary.phreg html
print.summary.tpchreg html
print.tpchreg html
print.weibreg html
regtable html
risksets html
scania html
summary.aftreg html
summary.coxreg html
summary.phreg html
summary.tpchreg html
summary.weibreg html
swedeaths html
swepop html
table.events html
toBinary html
toDate html
toTime html
toTpch html
tpchreg html
weibreg html
weibreg.fit html
wfunk html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (eha)