* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ecp’ ...
** package ‘ecp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpiYYH81/R.INSTALL20b7ae4bbb1142/ecp/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c efast.cpp -o efast.o
efast.cpp: In function ‘SEXPREC* eFastC_delta(SEXP, SEXP, SEXP, SEXP, SEXP)’:
efast.cpp:417:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
417 | for(int i=0; i<POI.size(); ++i){
| ~^~~~~~~~~~~
efast.cpp: In function ‘SEXPREC* eFastC(SEXP, SEXP, SEXP, SEXP, SEXP)’:
efast.cpp:792:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
792 | for(int i=0; i<POI.size(); ++i){
| ~^~~~~~~~~~~
efast.cpp: In function ‘SEXPREC* ksFastC(SEXP, SEXP, SEXP, SEXP)’:
efast.cpp:974:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<double, int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
974 | for(int i=0; i<vec_st_sort.size(); ++i){
| ~^~~~~~~~~~~~~~~~~~~
efast.cpp:979:61: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<double, int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
979 | for(int to_erase=0; to_erase<vec_st_pair.size(); ++to_erase){
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~
efast.cpp:1075:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<int, double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1075 | for(j=0; j<ksVal_t.size(); ++j){
| ~^~~~~~~~~~~~~~~
efast.cpp:1123:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<int, double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1123 | for(j=0; j<ksVal_t.size(); ++j){
| ~^~~~~~~~~~~~~~~
efast.cpp:1231:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1231 | for(int i=0; i<POI.size(); ++i){
| ~^~~~~~~~~~~
efast.cpp: In function ‘SEXPREC* ksFastC_delta(SEXP, SEXP, SEXP, SEXP)’:
efast.cpp:1435:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<int, double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1435 | for(j=0; j<ksVal_t.size(); ++j){
| ~^~~~~~~~~~~~~~~
efast.cpp:1483:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<int, double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1483 | for(j=0; j<ksVal_t.size(); ++j){
| ~^~~~~~~~~~~~~~~
efast.cpp:1583:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1583 | for(int i=0; i<POI.size(); ++i){
| ~^~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c energyChangePoint.cpp -o energyChangePoint.o
energyChangePoint.cpp: In function ‘SEXPREC* getBounds(SEXP, SEXP, SEXP)’:
energyChangePoint.cpp:176:17: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
176 | if(Lat >= 0)//reset to -1, can reuse calculations and above code
| ^~
energyChangePoint.cpp:179:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
179 | start += Lat+1;
| ^~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kernelcpa.cpp -o kernelcpa.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ecp.so efast.o energyChangePoint.o kernelcpa.o registerDynamicSymbol.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpiYYH81/R.INSTALL20b7ae4bbb1142/ecp/src'
make[1]: Entering directory '/tmp/RtmpiYYH81/R.INSTALL20b7ae4bbb1142/ecp/src'
make[1]: Leaving directory '/tmp/RtmpiYYH81/R.INSTALL20b7ae4bbb1142/ecp/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ecp/00new/ecp/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘ecp’
finding HTML links ... done
ACGH.RData html
DJIA.RData html
e.agglo html
e.cp3o html
e.cp3o_delta html
e.divisive html
e.split html
ecp-internal html
find.closest html
getBetween html
getWithin html
gof.update html
kernelCPA html
ks.cp3o html
ks.cp3o_delta html
perm.cluster html
process.data html
sig.test html
splitPoint html
splitPointC html
updateDistance html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ecp)