* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘eaf’ ...
** package ‘eaf’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gsl-config... /usr/bin/gsl-config
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-24) 13.2.0’
make[1]: Entering directory '/tmp/Rtmpu5VFXg/R.INSTALLf7daa349f7d81/eaf/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c eaf/avl.c -o eaf/avl.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c eaf/eaf3d.c -o eaf/eaf3d.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c eaf/eaf.c -o eaf/eaf.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c eaf/io.c -o eaf/io.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mo-tools/hv_contrib.c -o mo-tools/hv_contrib.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mo-tools/hv.c -o mo-tools/hv.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mo-tools/pareto.c -o mo-tools/pareto.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mo-tools/whv.c -o mo-tools/whv.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mo-tools/whv_hype.c -o mo-tools/whv_hype.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Reaf.c -o Reaf.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Repsilon.c -o Repsilon.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Rhv.c -o Rhv.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Rnondominated.c -o Rnondominated.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o eaf.so eaf/avl.o eaf/eaf3d.o eaf/eaf.o eaf/io.o mo-tools/hv_contrib.o mo-tools/hv.o mo-tools/pareto.o mo-tools/whv.o mo-tools/whv_hype.o init.o Reaf.o Repsilon.o Rhv.o Rnondominated.o -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make -C eaf all march=none CC="gcc-13" CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  " OPT_CFLAGS="" WARN_CFLAGS="" DEBUG=0 EXE=
make[2]: Entering directory '/tmp/Rtmpu5VFXg/R.INSTALLf7daa349f7d81/eaf/src/eaf'
---> Removing /tmp/Rtmpu5VFXg/R.INSTALLf7daa349f7d81/eaf/src/eaf//eaf <---
---> Removing object files eaf.o io.o eaf_main.o eaf3d.o avl.o <---
make default
make[3]: Entering directory '/tmp/Rtmpu5VFXg/R.INSTALLf7daa349f7d81/eaf/src/eaf'
gcc-13   -DDEBUG=0 -DVERSION='"0.1svn292"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c -o eaf.o eaf.c
gcc-13   -DDEBUG=0 -DVERSION='"0.1svn292"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c -o io.o io.c
gcc-13   -DDEBUG=0 -DVERSION='"0.1svn292"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c -o eaf_main.o eaf_main.c
gcc-13   -DDEBUG=0 -DVERSION='"0.1svn292"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c -o eaf3d.o eaf3d.c
gcc-13   -DDEBUG=0 -DVERSION='"0.1svn292"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c -o avl.o avl.c
--> Building /tmp/Rtmpu5VFXg/R.INSTALLf7daa349f7d81/eaf/src/eaf//eaf version 0.1svn292 <---
gcc-13 -o /tmp/Rtmpu5VFXg/R.INSTALLf7daa349f7d81/eaf/src/eaf//eaf eaf.o io.o eaf_main.o eaf3d.o avl.o   -DDEBUG=0 -DVERSION='"0.1svn292"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -lm
make[3]: Leaving directory '/tmp/Rtmpu5VFXg/R.INSTALLf7daa349f7d81/eaf/src/eaf'
make[2]: Leaving directory '/tmp/Rtmpu5VFXg/R.INSTALLf7daa349f7d81/eaf/src/eaf'
make -C mo-tools all march=none CC="gcc-13" CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  " OPT_CFLAGS="" WARN_CFLAGS="" DEBUG=0 EXE=
make[2]: Entering directory '/tmp/Rtmpu5VFXg/R.INSTALLf7daa349f7d81/eaf/src/mo-tools'
---> Removing ./igd <---
---> Removing ./epsilon <---
---> Removing ./dominatedsets <---
---> Removing ./nondominated <---
---> Removing ./ndsort <---
---> Removing object files: igd.o epsilon.o dominatedsets.o nondominated.o io.o ndsort.o hv_contrib.o hv.o pareto.o whv.o whv_hype.o <---
make default
make[3]: Entering directory '/tmp/Rtmpu5VFXg/R.INSTALLf7daa349f7d81/eaf/src/mo-tools'
gcc-13   -I/usr/include  -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c -o igd.o igd.c
gcc-13   -I/usr/include  -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c -o io.o io.c
--> Building igd version 1.0svn175 <---
gcc-13 -o igd  igd.o io.o  -I/usr/include  -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -lm 
gcc-13   -I/usr/include  -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c -o epsilon.o epsilon.c
--> Building epsilon version 1.0svn175 <---
gcc-13 -o epsilon  epsilon.o io.o  -I/usr/include  -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -lm 
gcc-13   -I/usr/include  -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c -o dominatedsets.o dominatedsets.c
--> Building dominatedsets version 1.0svn175 <---
gcc-13 -o dominatedsets  dominatedsets.o io.o  -I/usr/include  -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -lm 
gcc-13   -I/usr/include  -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c -o nondominated.o nondominated.c
--> Building nondominated version 1.0svn175 <---
gcc-13 -o nondominated  nondominated.o io.o  -I/usr/include  -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -lm 
gcc-13   -I/usr/include  -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c -o ndsort.o ndsort.c
gcc-13   -I/usr/include  -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c -o hv_contrib.o hv_contrib.c
gcc-13   -I/usr/include  -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c -o hv.o hv.c
gcc-13   -I/usr/include  -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c -o pareto.o pareto.c
gcc-13   -I/usr/include  -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c -o whv.o whv.c
gcc-13   -I/usr/include  -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c -o whv_hype.o whv_hype.c
--> Building ndsort version 1.0svn175 <---
gcc-13 -o ndsort  ndsort.o pareto.o io.o hv_contrib.c hv.o  -I/usr/include  -D_GNU_SOURCE -DDEBUG=0 -DVERSION=\"1.0svn175\" -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -lm 
make[3]: Leaving directory '/tmp/Rtmpu5VFXg/R.INSTALLf7daa349f7d81/eaf/src/mo-tools'
make[2]: Leaving directory '/tmp/Rtmpu5VFXg/R.INSTALLf7daa349f7d81/eaf/src/mo-tools'
make[1]: Leaving directory '/tmp/Rtmpu5VFXg/R.INSTALLf7daa349f7d81/eaf/src'
make[1]: Entering directory '/tmp/Rtmpu5VFXg/R.INSTALLf7daa349f7d81/eaf/src'
make[1]: Leaving directory '/tmp/Rtmpu5VFXg/R.INSTALLf7daa349f7d81/eaf/src'
installing via 'install.libs.R' to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-eaf/00new/eaf
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘eaf’
    finding HTML links ... done
    CPFs                                    html  
    HybridGA                                html  
    SPEA2minstoptimeRichmond                html  
    SPEA2relativeRichmond                   html  
    SPEA2relativeVanzyl                     html  
    Vorob                                   html  
    attsurf2df                              html  
    choose_eafdiffplot                      html  
    eaf-package                             html  
    eafdiff                                 html  
    eafdiffplot                             html  
    eafplot                                 html  
    eafs                                    html  
    epsilon                                 html  
    gcp2x2                                  html  
    hv_contributions                        html  
    hypervolume                             html  
    igd                                     html  
    largest_eafdiff                         html  
    nondominated                            html  
    normalise                               html  
    pdf_crop                                html  
    read_datasets                           html  
    whv_hype                                html  
    whv_rect                                html  
    write_datasets                          html  
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘eaf’ as ‘eaf_2.5_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (eaf)