* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘dti’ ...
** package ‘dti’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-13) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/Rtmpkc6gJp/R.INSTALL335eb339154a93/dti/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Converter.cpp -o Converter.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Fiber.cpp -o Fiber.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Fibertracking.cpp -o Fibertracking.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c LawsonHansonnnls.f -o LawsonHansonnnls.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c TrackingInterface.cpp -o TrackingInterface.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Vector.cpp -o Vector.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c VectorList.cpp -o VectorList.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Voxel.cpp -o Voxel.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c aniso.f -o aniso.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c awsvar.f -o awsvar.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bessel.c -o bessel.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bmixtensorpl.c -o bmixtensorpl.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c dtifull.f -o dtifull.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c dtinraw2.f -o dtinraw2.o
dtinraw2.f:102:41:
102 | double precision x(10000),fw(10000)
| 1
Warning: Array ‘fw’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
dtinraw2.f:102:31:
102 | double precision x(10000),fw(10000)
| 1
Warning: Array ‘x’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c fibers.f -o fibers.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c misc.f -o misc.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c mixtenbv.f -o mixtenbv.o
mixtenbv.f:549:72:
549 | wi(1,i)=w0
| ^
Warning: ‘w0’ may be used uninitialized [-Wmaybe-uninitialized]
mixtenbv.f:491:31:
491 | 1 z1,dng,albv,lbv,w0
| ^
note: ‘w0’ was declared here
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c mixtens.f -o mixtens.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c mixtensl.f -o mixtensl.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mixtensorpl.c -o mixtensorpl.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c nlrdtirg.f -o nlrdtirg.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c rice.f -o rice.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c show3d.f -o show3d.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c smse3.f -o smse3.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c tensor.f -o tensor.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tensorc.c -o tensorc.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o dti.so Converter.o Fiber.o Fibertracking.o LawsonHansonnnls.o TrackingInterface.o Vector.o VectorList.o Voxel.o aniso.o awsvar.o bessel.o bmixtensorpl.o dtifull.o dtinraw2.o fibers.o init.o misc.o mixtenbv.o mixtens.o mixtensl.o mixtensorpl.o nlrdtirg.o rice.o show3d.o smse3.o tensor.o tensorc.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpkc6gJp/R.INSTALL335eb339154a93/dti/src'
make[1]: Entering directory '/tmp/Rtmpkc6gJp/R.INSTALL335eb339154a93/dti/src'
make[1]: Leaving directory '/tmp/Rtmpkc6gJp/R.INSTALL335eb339154a93/dti/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-dti/00new/dti/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘dti’
finding HTML links ... done
AdjacencyMatrix html
awssigmc html
colqFA html
combineDWIdata html
dkiTensor-methods html
dti-class html
dti-package html
dti.options html
dti.smooth-methods html
dtiIndices-methods html
dtiTensor-methods html
dwi.smooth-methods html
dwiMD-methods html
dwiMixtensor-methods html
dwiQball-methods html
dwiRiceBias-methods html
dwiSqrtODF-methods html
extract-methods html
getmask-methods html
getsdofsb-methods html
medinria html
optgrad html
optgradients html
plot-methods html
polyeder html
print-methods html
readDWIdata html
sdpar-methods html
setmask-methods html
show-methods html
show3d-methods html
showFAColorScale html
subsetg html
summary-methods html
tracking-methods html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dti)